Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq26 118 3e-21 seq28 105 2e-17 seq2 86.0 2e-11 >seq26 Length=492030 Score = 118 bits (130), Expect = 3e-21 Identities = 385/588 (65%), Gaps = 24/588 (4%) Strand=Plus/Minus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471 ||| || ||| |||||| || || |||| ||||| || || | | || || |||| Sbjct 251038 ACCGCAGATATCACACACGTGCACCGTGTACGCATCCGAAACGGTAAAGAGACGTTCCTT 250979 Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531 ||| | |||||||| | ||||||||||||||| ||||| || |||||||| || Sbjct 250978 CAAAAAGGCGGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAG 250919 Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC--- 251588 |||||| || | ||| | ||||||| ||||||| ||||| ||| | || ||||| Sbjct 250918 ACCACCGTCCCTAGCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAGCGGACCACG 250859 Query 251589 -GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGG 251647 | ||||| || ||| || | ||||||||| | ||||| |||||| ||| | Sbjct 250858 AGCACGAGCG----TGAATCTTGTCGTCGACCATATGCCTTAGACGTTGGTAGTATGTAG 250803 Query 251648 GACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGT 251707 | || | |||||| | |||| | || ||| || | | || ||||| | ||| Sbjct 250802 GTCCCAAGAAGATTTGTGTTCGCATCTTCTTTCCCGTGTGGCCATTGTACATGATCTCGA 250743 Query 251708 TTCCATTAGATTCATAACCAAGTTTCTGTAGC--TCTGAAGCAATATCACCAATCTTGAA 251765 ||| || || || | || ||| | | | || | | | | ||| Sbjct 250742 AACCACGCTTTTGGTAGCCGGCATCCTCAAGCAGACCGGA-CACT-TGGTCGACGGTGAT 250685 Query 251766 TTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAAT--CAAC-ACTTTGCCTAA 251822 | | | || ||| |||| || | | ||| | ||| || | || ||| | Sbjct 250684 ATCGGTGAAGGGTGTGGCGTCACCCTCTTGTCCCGT---AATGGCACCGACCTTGGAGAG 250628 Query 251823 AAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGAT 251882 || ||| ||| ||||| || ||||||||| ||||| || ||||| |||||||| Sbjct 250627 CAGACACTCGATCAAATGGGCAATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGAT 250568 Query 251883 GATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTT 251939 | || ||| | ||||| || | ||| |||||||| ||||| | || || | Sbjct 250567 CAGATCCGGTGTGAGTCCCTCCCTGGAGAATGGCATATC---TTCCTGGCGGTAGGTGAT 250511 Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| ||||||||||| |||||||||||| ||||| |||||||| Sbjct 250510 ACCAATGGTTCCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 250463 Score = 89.7 bits (98), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 8/145 (6%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 |||||||||||||||||||||||||||||||| || || | |||||||||||| || | Sbjct 250965 GCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAGACCACCGTCCCTA 250906 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAA----CAGTTCTTGGACCCTGAGCACGATA 233388 | | ||||| ||| | || ||||| | || ||| ||||| |||||||| Sbjct 250905 GCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAG----CGGACCACGAGCACGAGC 250850 Query 233389 ATTAATTTTATCTTTAACCATATGC 233413 | ||| || || | ||||||||| Sbjct 250849 GTGAATCTTGTCGTCGACCATATGC 250825 >seq28 Length=367513 Score = 105 bits (116), Expect = 2e-17 Identities = 171/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| ||||| | ||||| | |||||| || || |||||||| | ||| || Sbjct 348053 CATAACATCTTCGAGCGCCTTGACGAGACGACGTTGGATGTAACCAGTCTCGGCTGTCTT 347994 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG- 302683 || ||||||||||| | ||| |||||||| |||| || |||||||| | ||||| Sbjct 347993 GACTGCTGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGA---ATTCCGA 347937 Query 302684 -GTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 | || || || | || ||||| | || ||||||||||| | || ||||| | ||| Sbjct 347936 AGGGGTGAGACCGCGAAGGTAGGAGTTTTCGACGAAACCACGGGATTCTGGCGAGTAGTC 347877 Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATC 302801 | ||| | || || ||||| ||||||| | |||| || || ||||||| ||| || Sbjct 347876 GTCCTTTGAGAAATGCGGCAGTGTCCTGTATTTGAAGCCATAGGGAATACGCTGTCCTTC 347817 Query 302802 AAC 302804 || Sbjct 347816 CAC 347814 >seq2 Length=1797335 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 353938 TCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGA 353997 ||||||||||| ||| | |||||| | ||| || || || || ||||| || Sbjct 715534 TCGGGGCAGAGAGCACCAACGAATTCTTCGTTATGCGAAATCATGATGACACCACCCTTG 715593 Query 353998 TAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGT 354057 ||| ||| || |||||| |||| |||||||| ||||| | ||| || || ||| Sbjct 715594 TAGTCACGAATGGCAACAGCGAGACCACCGAGCGAGTCGCGGTCCAAGAAGTTGGTGGGT 715653 Query 354058 TCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACC 354117 ||||| || | || | ||||| | ||||||| || | || || || ||||| ||| Sbjct 715654 TCGTCGAGAACGAGGAGATGCGGGTTGTTCCACATGGCACCGGCAAGCACAACCTTGACC 715713 Query 354118 TTCTGTCCGCCTGATAG 354134 |||||||| || || || Sbjct 715714 TTCTGTCCTCCGGAAAG 715730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816110244623