Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq26 118 3e-21
seq28 105 2e-17
seq2 86.0 2e-11
>seq26
Length=492030
Score = 118 bits (130), Expect = 3e-21
Identities = 385/588 (65%), Gaps = 24/588 (4%)
Strand=Plus/Minus
Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471
||| || ||| |||||| || || |||| ||||| || || | | || || ||||
Sbjct 251038 ACCGCAGATATCACACACGTGCACCGTGTACGCATCCGAAACGGTAAAGAGACGTTCCTT 250979
Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531
||| | |||||||| | ||||||||||||||| ||||| || |||||||| ||
Sbjct 250978 CAAAAAGGCGGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAG 250919
Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC--- 251588
|||||| || | ||| | ||||||| ||||||| ||||| ||| | || |||||
Sbjct 250918 ACCACCGTCCCTAGCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAGCGGACCACG 250859
Query 251589 -GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGG 251647
| ||||| || ||| || | ||||||||| | ||||| |||||| ||| |
Sbjct 250858 AGCACGAGCG----TGAATCTTGTCGTCGACCATATGCCTTAGACGTTGGTAGTATGTAG 250803
Query 251648 GACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGT 251707
| || | |||||| | |||| | || ||| || | | || ||||| | |||
Sbjct 250802 GTCCCAAGAAGATTTGTGTTCGCATCTTCTTTCCCGTGTGGCCATTGTACATGATCTCGA 250743
Query 251708 TTCCATTAGATTCATAACCAAGTTTCTGTAGC--TCTGAAGCAATATCACCAATCTTGAA 251765
||| || || || | || ||| | | | || | | | | |||
Sbjct 250742 AACCACGCTTTTGGTAGCCGGCATCCTCAAGCAGACCGGA-CACT-TGGTCGACGGTGAT 250685
Query 251766 TTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAAT--CAAC-ACTTTGCCTAA 251822
| | | || ||| |||| || | | ||| | ||| || | || ||| |
Sbjct 250684 ATCGGTGAAGGGTGTGGCGTCACCCTCTTGTCCCGT---AATGGCACCGACCTTGGAGAG 250628
Query 251823 AAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGAT 251882
|| ||| ||| ||||| || ||||||||| ||||| || ||||| ||||||||
Sbjct 250627 CAGACACTCGATCAAATGGGCAATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGAT 250568
Query 251883 GATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTT 251939
| || ||| | ||||| || | ||| |||||||| ||||| | || || |
Sbjct 250567 CAGATCCGGTGTGAGTCCCTCCCTGGAGAATGGCATATC---TTCCTGGCGGTAGGTGAT 250511
Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||| ||||||||||| |||||||||||| ||||| ||||||||
Sbjct 250510 ACCAATGGTTCCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 250463
Score = 89.7 bits (98), Expect = 2e-12
Identities = 107/145 (74%), Gaps = 8/145 (6%)
Strand=Plus/Minus
Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332
|||||||||||||||||||||||||||||||| || || | |||||||||||| || |
Sbjct 250965 GCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAGACCACCGTCCCTA 250906
Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAA----CAGTTCTTGGACCCTGAGCACGATA 233388
| | ||||| ||| | || ||||| | || ||| ||||| ||||||||
Sbjct 250905 GCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAG----CGGACCACGAGCACGAGC 250850
Query 233389 ATTAATTTTATCTTTAACCATATGC 233413
| ||| || || | |||||||||
Sbjct 250849 GTGAATCTTGTCGTCGACCATATGC 250825
>seq28
Length=367513
Score = 105 bits (116), Expect = 2e-17
Identities = 171/243 (70%), Gaps = 6/243 (2%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||| ||||| | ||||| | |||||| || || |||||||| | ||| ||
Sbjct 348053 CATAACATCTTCGAGCGCCTTGACGAGACGACGTTGGATGTAACCAGTCTCGGCTGTCTT 347994
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG- 302683
|| ||||||||||| | ||| |||||||| |||| || |||||||| | |||||
Sbjct 347993 GACTGCTGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGA---ATTCCGA 347937
Query 302684 -GTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741
| || || || | || ||||| | || ||||||||||| | || ||||| | |||
Sbjct 347936 AGGGGTGAGACCGCGAAGGTAGGAGTTTTCGACGAAACCACGGGATTCTGGCGAGTAGTC 347877
Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATC 302801
| ||| | || || ||||| ||||||| | |||| || || ||||||| ||| ||
Sbjct 347876 GTCCTTTGAGAAATGCGGCAGTGTCCTGTATTTGAAGCCATAGGGAATACGCTGTCCTTC 347817
Query 302802 AAC 302804
||
Sbjct 347816 CAC 347814
>seq2
Length=1797335
Score = 86.0 bits (94), Expect = 2e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 353938 TCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGA 353997
||||||||||| ||| | |||||| | ||| || || || || ||||| ||
Sbjct 715534 TCGGGGCAGAGAGCACCAACGAATTCTTCGTTATGCGAAATCATGATGACACCACCCTTG 715593
Query 353998 TAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGT 354057
||| ||| || |||||| |||| |||||||| ||||| | ||| || || |||
Sbjct 715594 TAGTCACGAATGGCAACAGCGAGACCACCGAGCGAGTCGCGGTCCAAGAAGTTGGTGGGT 715653
Query 354058 TCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACC 354117
||||| || | || | ||||| | ||||||| || | || || || ||||| |||
Sbjct 715654 TCGTCGAGAACGAGGAGATGCGGGTTGTTCCACATGGCACCGGCAAGCACAACCTTGACC 715713
Query 354118 TTCTGTCCGCCTGATAG 354134
|||||||| || || ||
Sbjct 715714 TTCTGTCCTCCGGAAAG 715730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471816110244623
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |