Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12 149 8e-30 seq5 143 3e-28 seq16 140 4e-27 seq29 95.1 1e-13 >seq12 Length=1097884 Score = 149 bits (164), Expect = 8e-30 Identities = 137/171 (80%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 |||||| || |||| ||| | ||||| ||| | || || ||| | |||||||||| Sbjct 270287 GTGGGATCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCG 270345 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| ||||||||| |||| ||||| | || |||||| | || || ||||||| Sbjct 270346 CCAACTACCTGGACATCAAGGCTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGA 270405 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| ||||| |||||||| |||||||| |||||| || ||| Sbjct 270406 TCAAGGGCAAGTCACCCGATGAGATCCGTAAGACCTTCAACATCCAGAACG 270456 >seq5 Length=1540376 Score = 143 bits (158), Expect = 3e-28 Identities = 223/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| |||||| |||||| ||||||||||| || | || || || Sbjct 775400 GCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATG 775459 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | | |||| ||| || ||||| | | Sbjct 775460 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC 775519 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 775520 AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGC 775579 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||||||| ||||| | ||| ||||||||||| || |||| Sbjct 775580 AGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATG 775639 Query 868931 ATCTGCCTG---GGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || ||| | | | | ||| ||||||||| |||| | | | |||| |||||| Sbjct 775640 ATAGCTCTGACAGACTC-TGGGC--TGGGCTTGTTCTCGAGGAGAGAGAAGAGAAGGCAG 775696 Query 868988 GCAAAGTCGCAGTGCA 869003 || |||||| ||||| Sbjct 775697 GCGAAGTCGGTGTGCA 775712 Score = 104 bits (114), Expect = 3e-16 Identities = 177/256 (69%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | |||||| || ||| ||||| ||||| ||| | |||| | | ||| Sbjct 775997 GAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGT 776056 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | ||| || | | ||||||||| || ||||| ||| ||| ||||| Sbjct 776057 ACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAAG 776116 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCAGT 869807 || || |||||||| ||| ||| ||||||||| ||| |||| || | ||||| Sbjct 776117 AAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAG--ACGCTTGTTCCAGT 776174 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | ||| | |||||| | |||||| |||||||||| || ||||||||||| | Sbjct 776175 CGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCT 776234 Query 869868 TGTACATCTCCCATAC 869883 ||||||||| ||| || Sbjct 776235 TGTACATCTGCCAGAC 776250 Score = 91.5 bits (100), Expect = 2e-12 Identities = 196/289 (68%), Gaps = 13/289 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| || | || |||||||| || ||||||||| Sbjct 775715 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 775774 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| | |||| || ||| ||||| ||||| || ||||| || Sbjct 775775 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 775834 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356 | | || || | ||| || ||| ||| | ||||| |||||| || ||| Sbjct 775835 GCAACAAGGCGGTTGGCGAA--TGTGGAG----TTCTTGTCGGAGATCCATCGCAGGGCC 775888 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| || | | | || | ||||||||||| ||||||| ||| Sbjct 775889 CAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGT--ACCTGC 775946 Query 869417 TCGGC--CGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || || || ||| || |||||||| || || || |||||||| Sbjct 775947 GCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGCAGAGAGTAGGTCTC 775995 >seq16 Length=840418 Score = 140 bits (154), Expect = 4e-27 Identities = 211/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| ||||| || |||| ||| | || ||||||||||| | ||| || || || Sbjct 27147 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 27206 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| | | ||| | ||| | || || | |||| || | ||| Sbjct 27207 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 27266 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | ||| || ||||| |||||||| ||||| || Sbjct 27267 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 27326 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| | ||| ||||| ||||| |||| || | ||||| Sbjct 27327 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 27386 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| | ||| |||| || ||||| ||| | |||||| ||||||||| Sbjct 27387 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 27446 Score = 105 bits (116), Expect = 8e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| ||||||||| ||||||| ||||| ||||| ||||| || ||| ||||||||| Sbjct 26994 CATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTT 27053 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||||||||||| ||||| || || | | | ||| |||||||| ||||| ||||| Sbjct 27054 GCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTA 27113 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | ||| ||||| || |||||| ||| || Sbjct 27114 GATGGCGAAGGCACCTGGACGCTTGTTGCCACC 27146 Score = 86.0 bits (94), Expect = 8e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 |||||||||| || ||||| ||||| ||||| | | || ||||| | || | Sbjct 743940 AGGACAGCATAGGTGGCACAGTGACTTGCGTCATAAGAGGCTGCCCAACAGGCTTGGGAG 743999 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 | || |||||||||||| | || ||| | | | || |||||||||||||| ||||| | Sbjct 744000 AACCATGCTTTGACAAGCTGGAAGCCAAGTTGGGACATGCCATGCTGTCGATACCGGCGA 744059 Query 19165 CCAAGGGATTCGAGATTGGC 19184 ||||||| || ||||| ||| Sbjct 744060 CCAAGGGGTTTGAGATCGGC 744079 >seq29 Length=353090 Score = 95.1 bits (104), Expect = 1e-13 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 1852166 GCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCG 1852225 || || |||||||||||||| || ||||||||| |||| || ||||||| ||||||| Sbjct 168010 GCGAAGATCTTGCGCTGGTCTACACCTCCAAACTGGACGTCTACATCGAGGTACTGCTCG 167951 Query 1852226 TCGAGGGCCTGCATGAGCGGGTAGA 1852250 || |||||||||||||| ||||||| Sbjct 167950 TCAAGGGCCTGCATGAGTGGGTAGA 167926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107132716890043