Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq12 149 8e-30
seq5 143 3e-28
seq16 140 4e-27
seq29 95.1 1e-13
>seq12
Length=1097884
Score = 149 bits (164), Expect = 8e-30
Identities = 137/171 (80%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189
|||||| || |||| ||| | ||||| ||| | || || ||| | ||||||||||
Sbjct 270287 GTGGGATCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCG 270345
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| ||||||||| |||| ||||| | || |||||| | || || |||||||
Sbjct 270346 CCAACTACCTGGACATCAAGGCTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGA 270405
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||| ||||| |||||||| |||||||| |||||| || |||
Sbjct 270406 TCAAGGGCAAGTCACCCGATGAGATCCGTAAGACCTTCAACATCCAGAACG 270456
>seq5
Length=1540376
Score = 143 bits (158), Expect = 3e-28
Identities = 223/316 (71%), Gaps = 6/316 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| |||||| |||||| ||||||||||| || | || || ||
Sbjct 775400 GCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATG 775459
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | | |||| ||| || ||||| | |
Sbjct 775460 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC 775519
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| ||||| ||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 775520 AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGC 775579
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | ||||||| ||||| | ||| ||||||||||| || ||||
Sbjct 775580 AGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATG 775639
Query 868931 ATCTGCCTG---GGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987
|| ||| | | | | ||| ||||||||| |||| | | | |||| ||||||
Sbjct 775640 ATAGCTCTGACAGACTC-TGGGC--TGGGCTTGTTCTCGAGGAGAGAGAAGAGAAGGCAG 775696
Query 868988 GCAAAGTCGCAGTGCA 869003
|| |||||| |||||
Sbjct 775697 GCGAAGTCGGTGTGCA 775712
Score = 104 bits (114), Expect = 3e-16
Identities = 177/256 (69%), Gaps = 7/256 (3%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||| | |||||| || ||| ||||| ||||| ||| | |||| | | |||
Sbjct 775997 GAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGT 776056
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || | ||| || | | ||||||||| || ||||| ||| ||| |||||
Sbjct 776057 ACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAAG 776116
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCAGT 869807
|| || |||||||| ||| ||| ||||||||| ||| |||| || | |||||
Sbjct 776117 AAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAG--ACGCTTGTTCCAGT 776174
Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867
| ||| | |||||| | |||||| |||||||||| || ||||||||||| |
Sbjct 776175 CGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCT 776234
Query 869868 TGTACATCTCCCATAC 869883
||||||||| ||| ||
Sbjct 776235 TGTACATCTGCCAGAC 776250
Score = 91.5 bits (100), Expect = 2e-12
Identities = 196/289 (68%), Gaps = 13/289 (4%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||| || ||| | |||||| || | || |||||||| || |||||||||
Sbjct 775715 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 775774
Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|||||||| ||||||| | |||| || ||| ||||| ||||| || ||||| ||
Sbjct 775775 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 775834
Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356
| | || || | ||| || ||| ||| | ||||| |||||| || |||
Sbjct 775835 GCAACAAGGCGGTTGGCGAA--TGTGGAG----TTCTTGTCGGAGATCCATCGCAGGGCC 775888
Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416
||||||||||| || | | | || | ||||||||||| ||||||| |||
Sbjct 775889 CAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGT--ACCTGC 775946
Query 869417 TCGGC--CGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| || || || ||| || |||||||| || || || ||||||||
Sbjct 775947 GCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGCAGAGAGTAGGTCTC 775995
>seq16
Length=840418
Score = 140 bits (154), Expect = 4e-27
Identities = 211/300 (70%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| ||||| || |||| ||| | || ||||||||||| | ||| || || ||
Sbjct 27147 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 27206
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| | | ||| | ||| | || || | |||| || | |||
Sbjct 27207 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 27266
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| ||||| || | ||||||||| | ||| || ||||| |||||||| ||||| ||
Sbjct 27267 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 27326
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| | ||| ||||| ||||| |||| || | |||||
Sbjct 27327 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 27386
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||| | ||| |||| || ||||| ||| | |||||| |||||||||
Sbjct 27387 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 27446
Score = 105 bits (116), Expect = 8e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507
||| ||||||||| ||||||| ||||| ||||| ||||| || ||| |||||||||
Sbjct 26994 CATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTT 27053
Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567
|||||||||||| ||||| || || | | | ||| |||||||| ||||| |||||
Sbjct 27054 GCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTA 27113
Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
| ||| ||||| || |||||| ||| ||
Sbjct 27114 GATGGCGAAGGCACCTGGACGCTTGTTGCCACC 27146
Score = 86.0 bits (94), Expect = 8e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104
|||||||||| || ||||| ||||| ||||| | | || ||||| | || |
Sbjct 743940 AGGACAGCATAGGTGGCACAGTGACTTGCGTCATAAGAGGCTGCCCAACAGGCTTGGGAG 743999
Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164
| || |||||||||||| | || ||| | | | || |||||||||||||| ||||| |
Sbjct 744000 AACCATGCTTTGACAAGCTGGAAGCCAAGTTGGGACATGCCATGCTGTCGATACCGGCGA 744059
Query 19165 CCAAGGGATTCGAGATTGGC 19184
||||||| || ||||| |||
Sbjct 744060 CCAAGGGGTTTGAGATCGGC 744079
>seq29
Length=353090
Score = 95.1 bits (104), Expect = 1e-13
Identities = 72/85 (85%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 1852166 GCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCG 1852225
|| || |||||||||||||| || ||||||||| |||| || ||||||| |||||||
Sbjct 168010 GCGAAGATCTTGCGCTGGTCTACACCTCCAAACTGGACGTCTACATCGAGGTACTGCTCG 167951
Query 1852226 TCGAGGGCCTGCATGAGCGGGTAGA 1852250
|| |||||||||||||| |||||||
Sbjct 167950 TCAAGGGCCTGCATGAGTGGGTAGA 167926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107132716890043
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |