Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq16 205 8e-48 seq10 113 4e-20 >seq16 Length=840418 Score = 205 bits (226), Expect = 8e-48 Identities = 974/1527 (64%), Gaps = 62/1527 (4%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| || | || || || || |||||| |||| | ||||| || Sbjct 26101 ACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAG 26160 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||||| ||||||||||| | |||| || || |||||| || | | || Sbjct 26161 CACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGC 26220 Query 138628 GAATTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685 || || |||| |||||| ||| ||| ||||| || |||| ||||||||| | | Sbjct 26221 GAGTTGCGTACACCGTGCTCAGCAATCTTC--TCCTTCAGAGACGCCCAGTCCCAGAGGT 26278 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745 | ||||| | ||||||||||||||||| | || ||| | ||||| |||| Sbjct 26279 CAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTT 26338 Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 |||| | | ||| ||||| || | || | ||| | ||| ||| ||| Sbjct 26339 CGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCAT 26398 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865 ||| || || ||| || || |||||| || ||| | |||| | || | Sbjct 26399 GGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAA 26458 Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925 |||||| ||| || ||||| || ||||| || |||| |||| || || |||| Sbjct 26459 GGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGC 26518 Query 138926 GCAGATTTGACGCTTT-TGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTT 138984 | | | ||| || ||| |||||| ||| || | ||| || |||||||| ||||| Sbjct 26519 GGA-AGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTC 26577 Query 138985 AAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCC 139043 || || || ||| |||| || | | | | | | | | || || | ||| | Sbjct 26578 AAGTTGCGGGTGACGACCTGTGT-GACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGC 26636 Query 139044 GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGC 139103 |||| |||||| | | || | | || | || || | |||||| || || Sbjct 26637 CTTGTAGTCGACAAA----AGAAGGCAG--GGCAAGA---GAAGCCAAGTTGCAAACAGC 26687 Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163 || || || || || |||| || ||||| || | |||| || | ||| || Sbjct 26688 GACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGT 26747 Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223 ||| | || | || ||||| || ||||| ||||| || ||||| |||||| | || | Sbjct 26748 ACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTT 26807 Query 139224 GCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACG 139283 ||||| || |||| ||| | ||| | | ||| ||||| | | | Sbjct 26808 ACCAGTCTCGGTCTGTGCCTCAAGGATGGCGT--ACCAA------AGCTTTTGT-----G 26854 Query 139284 CACGTAAAGT-TCG----------TC-GCG-CTCGTACTTTTCGTAGAGTTCGTCGAATC 139330 | || | ||| ||| || || |||||| | ||||| || | |||||| Sbjct 26855 CGCGAACAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATT 26914 Query 139331 GTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGC 139390 |||||||||| | || | || | | |||| || || ||||| || | ||| || Sbjct 26915 CTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGC 26974 Query 139391 CGTTCGCCTTGA-CGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCG 139449 |||| | ||||| | ||| ||||||| || || |||||||||| |||| | | | |||| Sbjct 26975 CGTT-GTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCG 27033 Query 139450 CGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCA 139509 || || || ||| || ||| || || |||||| |||| |||||| Sbjct 27034 CGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCA 27093 Query 139510 GCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCG 139566 ||||||||||| || || |||||||| | || ||| || ||| ||||| || ||| Sbjct 27094 GCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCG 27153 Query 139567 ACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCG 139626 || | || ||| || ||| |||| || | ||| || ||||| | | ||||||| Sbjct 27154 ACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCG 27213 Query 139627 TTGGTGCTACGGATGG----GACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGAT 139682 || |||| || |||| | | || ||| || | | || || |||| ||| || Sbjct 27214 TTAGTGCCACCGATGTATGAGCCAGT----AGCACGAATGCGGTGCACGTTGAGGCCAAT 27269 Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTA 139741 ||||| | ||||| || || | || || | | ||| ||||| || || | Sbjct 27270 ACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG-AGTGTGTCGTAAATGCCGTCGA 27328 Query 139742 TGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGG 139801 ||||||| |||| ||| || || ||||||||||| | ||| ||| | ||||| | Sbjct 27329 TGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCG 27388 Query 139802 CTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTT 139861 | |||| || || ||||| ||||| | || ||||| | ||||| || | Sbjct 27389 CGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCT 27448 Query 139862 CGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTT 139921 ||||||| || | || || ||||| || || |||| || ||||| ||||| |||| Sbjct 27449 CGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTT 27508 Query 139922 GGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTT 139979 | || ||||| ||| ||| | || ||||| | ||| || || ||||| Sbjct 27509 GTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGT--TCGAGTGTCTT 27566 Query 139980 GTAGCCAAAGTACCTATAGTTGAAATC 140006 | | |||||| || |||||||| || Sbjct 27567 GAAACCAAAGAACTGGTAGTTGAAGTC 27593 >seq10 Length=1117896 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || ||||| | ||||| || ||| | Sbjct 915292 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCCAGC 915351 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| || || || ||||| || || Sbjct 915352 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAG 915411 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || |||||||| || ||| | ||||| || ||| Sbjct 915412 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 915471 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || ||||||||| Sbjct 915472 ATCCAGAAGGAGTCTACTCTCCACTTGGTG 915501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || || || || || | ||||||| | || | || || | Sbjct 914860 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 914919 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || ||||| ||||| ||||| | ||||| ||||| || Sbjct 914920 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 914979 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || ||||| | | | |||| || || |||||||| ||||| || ||| | ||| Sbjct 914980 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACATTGCAC 915039 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || | || |||| || || Sbjct 915040 CTTGTCCTCCGCCTGCGTGGTGG 915062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897155726120