Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq16 205 8e-48
seq10 113 4e-20
>seq16
Length=840418
Score = 205 bits (226), Expect = 8e-48
Identities = 974/1527 (64%), Gaps = 62/1527 (4%)
Strand=Plus/Plus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
||||| || ||||| || | || || || || |||||| |||| | ||||| ||
Sbjct 26101 ACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAG 26160
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627
| |||||||| ||||||||||| | |||| || || |||||| || | | ||
Sbjct 26161 CACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGC 26220
Query 138628 GAATTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685
|| || |||| |||||| ||| ||| ||||| || |||| ||||||||| | |
Sbjct 26221 GAGTTGCGTACACCGTGCTCAGCAATCTTC--TCCTTCAGAGACGCCCAGTCCCAGAGGT 26278
Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745
| ||||| | ||||||||||||||||| | || ||| | ||||| ||||
Sbjct 26279 CAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTT 26338
Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805
|||| | | ||| ||||| || | || | ||| | ||| ||| |||
Sbjct 26339 CGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCAT 26398
Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865
||| || || ||| || || |||||| || ||| | |||| | || |
Sbjct 26399 GGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAA 26458
Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925
|||||| ||| || ||||| || ||||| || |||| |||| || || ||||
Sbjct 26459 GGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGC 26518
Query 138926 GCAGATTTGACGCTTT-TGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTT 138984
| | | ||| || ||| |||||| ||| || | ||| || |||||||| |||||
Sbjct 26519 GGA-AGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTC 26577
Query 138985 AAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCC 139043
|| || || ||| |||| || | | | | | | | | || || | ||| |
Sbjct 26578 AAGTTGCGGGTGACGACCTGTGT-GACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGC 26636
Query 139044 GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGC 139103
|||| |||||| | | || | | || | || || | |||||| || ||
Sbjct 26637 CTTGTAGTCGACAAA----AGAAGGCAG--GGCAAGA---GAAGCCAAGTTGCAAACAGC 26687
Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163
|| || || || || |||| || ||||| || | |||| || | ||| ||
Sbjct 26688 GACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGT 26747
Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223
||| | || | || ||||| || ||||| ||||| || ||||| |||||| | || |
Sbjct 26748 ACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTT 26807
Query 139224 GCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACG 139283
||||| || |||| ||| | ||| | | ||| ||||| | | |
Sbjct 26808 ACCAGTCTCGGTCTGTGCCTCAAGGATGGCGT--ACCAA------AGCTTTTGT-----G 26854
Query 139284 CACGTAAAGT-TCG----------TC-GCG-CTCGTACTTTTCGTAGAGTTCGTCGAATC 139330
| || | ||| ||| || || |||||| | ||||| || | ||||||
Sbjct 26855 CGCGAACAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATT 26914
Query 139331 GTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGC 139390
|||||||||| | || | || | | |||| || || ||||| || | ||| ||
Sbjct 26915 CTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGC 26974
Query 139391 CGTTCGCCTTGA-CGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCG 139449
|||| | ||||| | ||| ||||||| || || |||||||||| |||| | | | ||||
Sbjct 26975 CGTT-GTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCG 27033
Query 139450 CGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCA 139509
|| || || ||| || ||| || || |||||| |||| ||||||
Sbjct 27034 CGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCA 27093
Query 139510 GCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCG 139566
||||||||||| || || |||||||| | || ||| || ||| ||||| || |||
Sbjct 27094 GCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCG 27153
Query 139567 ACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCG 139626
|| | || ||| || ||| |||| || | ||| || ||||| | | |||||||
Sbjct 27154 ACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCG 27213
Query 139627 TTGGTGCTACGGATGG----GACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGAT 139682
|| |||| || |||| | | || ||| || | | || || |||| ||| ||
Sbjct 27214 TTAGTGCCACCGATGTATGAGCCAGT----AGCACGAATGCGGTGCACGTTGAGGCCAAT 27269
Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTA 139741
||||| | ||||| || || | || || | | ||| ||||| || || |
Sbjct 27270 ACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG-AGTGTGTCGTAAATGCCGTCGA 27328
Query 139742 TGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGG 139801
||||||| |||| ||| || || ||||||||||| | ||| ||| | ||||| |
Sbjct 27329 TGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCG 27388
Query 139802 CTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTT 139861
| |||| || || ||||| ||||| | || ||||| | ||||| || |
Sbjct 27389 CGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCT 27448
Query 139862 CGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTT 139921
||||||| || | || || ||||| || || |||| || ||||| ||||| ||||
Sbjct 27449 CGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTT 27508
Query 139922 GGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTT 139979
| || ||||| ||| ||| | || ||||| | ||| || || |||||
Sbjct 27509 GTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGT--TCGAGTGTCTT 27566
Query 139980 GTAGCCAAAGTACCTATAGTTGAAATC 140006
| | |||||| || |||||||| ||
Sbjct 27567 GAAACCAAAGAACTGGTAGTTGAAGTC 27593
>seq10
Length=1117896
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || ||||| || || ||||| | ||||| || ||| |
Sbjct 915292 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCCAGC 915351
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | ||||| |||||||| ||||| || || || ||||| || ||
Sbjct 915352 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAG 915411
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||| || || || |||||||| || ||| | ||||| || |||
Sbjct 915412 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 915471
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
|| || ||||| || || || |||||||||
Sbjct 915472 ATCCAGAAGGAGTCTACTCTCCACTTGGTG 915501
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787
||||| || || || || || || || || | ||||||| | || | || || |
Sbjct 914860 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 914919
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||||||||| || || || ||||| ||||| ||||| | ||||| ||||| ||
Sbjct 914920 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 914979
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|| || ||||| | | | |||| || || |||||||| ||||| || ||| | |||
Sbjct 914980 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACATTGCAC 915039
Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930
| || | || |||| || ||
Sbjct 915040 CTTGTCCTCCGCCTGCGTGGTGG 915062
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897155726120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |