Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq12 145 1e-28 seq5 131 3e-24 seq16 127 3e-23 seq29 113 7e-19 seq18 86.0 1e-10 >seq12 Length=1097884 Score = 145 bits (160), Expect = 1e-28 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| | || || ||| | |||||||||||||||||||| ||||||||| Sbjct 270307 AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCGCCAACTACCTGGACATCAAGG 270366 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | |||||||| | || ||||||||||| || ||| | |||||||||||||| ||||| | Sbjct 270367 CTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGATCAAGGGCAAGTCACCCGATG 270426 Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | ||||| |||||||| |||||| || ||| Sbjct 270427 AGATCCGTAAGACCTTCAACATCCAGAACG 270456 >seq5 Length=1540376 Score = 131 bits (144), Expect = 3e-24 Identities = 179/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| |||||| |||||| ||||||||||| || | | Sbjct 775392 TGACACCAGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCA 775451 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | ||| ||||||| | ||||| ||| || |||| Sbjct 775452 GAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGA 775511 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| ||||| |||||||| || ||||| ||||||||||| | ||||||| Sbjct 775512 GGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCA 775571 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || || || | ||||| | ||||| | ||| ||||||||||| | Sbjct 775572 TGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTT 775631 Query 794131 CGATGATGAT 794140 | ||||||| Sbjct 775632 CAGTGATGAT 775641 Score = 118 bits (130), Expect = 2e-20 Identities = 203/292 (70%), Gaps = 7/292 (2%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || |||||||| || ||||||||||||||||| ||||||| |||| || ||| Sbjct 775751 AGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAG 775810 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 ||||| ||||| || ||||| || | || || || | ||| || ||| | || Sbjct 775811 AAGATACCCTCAACAGCGGCGAATGCAACAAGGCGGTTGGCGAATGTGGA---GTTCTTG 775867 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 | | |||||| || ||||| || ||||| || | | |||| | |||||||| Sbjct 775868 TCGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATG 775927 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGG--TCCTTGACGTAGGTGTCGATGAGGAGCG 794614 ||| ||||||| ||| | | | || || ||| ||| ||||||||||| || | Sbjct 775928 GCGTTGAAGAGGTA--CCTGCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGCAGAG 775985 Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||||||||||||||| | ||| || || ||| ||||| || || ||||| Sbjct 775986 AGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCA 776037 Score = 104 bits (114), Expect = 4e-16 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| | ||| || || | ||| || | | |||||||| || ||||| Sbjct 776042 GCCTCGGGGATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCA 776101 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 ||| ||| ||||| |||||||||||||| ||| ||| |||||||| ||| |||| Sbjct 776102 TCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGA 776161 Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | | ||||| | ||| | |||||||| |||||| |||||||| || || Sbjct 776162 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAA 776221 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352 ||||||||||| |||||||||| ||| Sbjct 776222 GCCTCGGCCTTCTTGTACATCTGCCA 776247 >seq16 Length=840418 Score = 127 bits (140), Expect = 3e-23 Identities = 208/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||||||||| || |||| ||| | || ||||||||||| | || || || || Sbjct 27147 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 27206 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| | | ||| | ||| | || || | |||| || | ||| Sbjct 27207 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 27266 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | ||| || | || || || ||||| ||||| || Sbjct 27267 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 27326 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| ||||| |||| || | ||||| Sbjct 27327 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 27386 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||||| | ||| |||| || ||| | ||| ||| |||||| |||||||| Sbjct 27387 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 27446 Score = 113 bits (124), Expect = 7e-19 Identities = 290/440 (66%), Gaps = 22/440 (5%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGG 2071641 ||| ||||||||||||| | || |||| || ||||||| ||||||||| | || Sbjct 26718 CTCAGTGCACAGGTTGGAG--CTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 26775 Query 2071642 TTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATG 2071701 ||| |||||||||| ||||| |||| ||| |||||| |||| ||| | |||| Sbjct 26776 TTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATG 26835 Query 2071702 GCCGACCAAA--TTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCC----CTNNNNNNNN 2071755 || |||||| ||| | ||||| || ||| ||||| | || Sbjct 26836 GCGTACCAAAGCTTTTGTGCGCGAACA-----GTC-TCGCGACCCTTGTTCTGCTTCTCG 26889 Query 2071756 NNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCG 2071815 | || || || || | | |||| | ||| ||||| || |||| Sbjct 26890 TAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCG 26949 Query 2071816 GACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC---ACCACGCGGCGCATAAACAGGTCG 2071872 |||||| | || | ||||| |||| ||| | ||||| | || || ||||| Sbjct 26950 TTCGGGCACATCAGTGTCCAGTTGCCGTT-GTCTTGAACACGCTTC--ATGAAGAGGTCA 27006 Query 2071873 CACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 2071932 ||||||| |||| ||||||||||| || ||| ||||||||||||||||||||| Sbjct 27007 GGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTG 27066 Query 2071933 TTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 2071992 |||||| || || | | || ||| |||||||| ||||| |||||| ||| ||||| Sbjct 27067 CGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCA 27126 Query 2071993 CCCTTGCGCTTGCCGCCGCC 2072012 || |||||| ||| || Sbjct 27127 CCTGGACGCTTGTTGCCACC 27146 >seq29 Length=353090 Score = 113 bits (124), Expect = 7e-19 Identities = 191/272 (70%), Gaps = 5/272 (2%) Strand=Plus/Minus Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445 || ||||||||| ||| || | ||||||||| || |||||| || || || ||| Sbjct 168130 TCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTTCC-TCCTTGTAGA--CCGGGAACC 168074 Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505 | ||||| | || || ||||| |||||| | | || ||| || || Sbjct 168073 ATGGGGTTCATCAAATGTGCGCGCTCCTTGTAGCCGATCTTGGGAAGGACATCCTTTGCG 168014 Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565 | || ||||||||||||||||| || ||||||||| |||| || ||||||| |||| Sbjct 168013 AGCGCGAAGATCTTGCGCTGGTCTACACCTCCAAACTGGACGTCTACATCGAGGTACTGC 167954 Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTT-GCGGTCCAT 2411624 ||||| |||||||||||||| ||||||| ||| || | |||| ||| | || Sbjct 167953 TCGTCAAGGGCCTGCATGAGTGGGTAGATGAGTCCACTCAAAGGCGCGTTCTCTGT-TTG 167895 Query 2411625 CTTGACCACCTGGGCGGCGGCCTTTTGCGCCG 2411656 |||||| |||| ||| | ||||| | ||||| Sbjct 167894 CTTGACAACCTCTGCGCCTGCCTTCTTCGCCG 167863 >seq18 Length=821743 Score = 86.0 bits (94), Expect = 1e-10 Identities = 236/356 (66%), Gaps = 12/356 (3%) Strand=Plus/Plus Query 2019048 GGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAG 2019107 ||||| |||||| |||| || || || ||| |||| | || | ||| | | ||| Sbjct 48510 GGCAAAACCACGTCCATCCTCTGTCTCGCACGCCAGCTCCTCGGTGACGCCTACAAAGAG 48569 Query 2019108 GCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATC 2019167 || || ||||||||||| || || |||||||| || | |||||||| || | | || Sbjct 48570 GCTGTTCTCGAACTCAACGCCTCTGACGAGCGTGGTATCGACGTCGTACGCAACAGGATA 48629 Query 2019168 AA--GCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCC 2019225 || || || ||| ||| | | || || | || ||| | || ||| | |||| | Sbjct 48630 AAGGGCTTCGCGC--AGAAGAAAGTCACACTTGCACCAGGCAGGCAAAAGCTCGTCATTC 48687 Query 2019226 TCGATGAGGCCGACTGCCTTACGTCGGCG--GCCCAGCAGGCCCTCCGATCGACCATGGA 2019283 | |||||||| ||| || | || | ||| || ||||| ||||| | ||| ||||| Sbjct 48688 TGGATGAGGCGGACAGCATGAC--CAGCGGTGCGCAGCAAGCCCTGAGGAGGACAATGGA 48745 Query 2019284 AAAGTACA--CCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATC 2019341 | |||| ||||| || |||||||| | || |||||| |||| | | |||| Sbjct 48746 GATCTACAGTGCAACA--ACACGGTTTGCATTCGCTTGCAACCAGTCGAACAAGATCATT 48803 Query 2019342 GAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCA 2019397 || | || ||| | || ||||| | | | || ||||| ||||| || || Sbjct 48804 GAGCCGCTGCAGTCGAGATGTGCCATACTCAGATACGCTCGCCTTACCGATGCGCA 48859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916237996409681