Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq12 145 1e-28
seq5 131 3e-24
seq16 127 3e-23
seq29 113 7e-19
seq18 86.0 1e-10
>seq12
Length=1097884
Score = 145 bits (160), Expect = 1e-28
Identities = 122/150 (81%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671
|||||||||| | || || ||| | |||||||||||||||||||| |||||||||
Sbjct 270307 AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCGCCAACTACCTGGACATCAAGG 270366
Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731
| |||||||| | || ||||||||||| || ||| | |||||||||||||| ||||| |
Sbjct 270367 CTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGATCAAGGGCAAGTCACCCGATG 270426
Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| ||||| |||||||| |||||| || |||
Sbjct 270427 AGATCCGTAAGACCTTCAACATCCAGAACG 270456
>seq5
Length=1540376
Score = 131 bits (144), Expect = 3e-24
Identities = 179/250 (72%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||||| |||||| |||||| ||||||||||| || | |
Sbjct 775392 TGACACCAGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCA 775451
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| || || |||||| | ||| ||||||| | ||||| ||| || ||||
Sbjct 775452 GAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGA 775511
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | ||||| ||||| |||||||| || ||||| ||||||||||| | |||||||
Sbjct 775512 GGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCA 775571
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||||| || || || || | ||||| | ||||| | ||| ||||||||||| |
Sbjct 775572 TGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTT 775631
Query 794131 CGATGATGAT 794140
| |||||||
Sbjct 775632 CAGTGATGAT 775641
Score = 118 bits (130), Expect = 2e-20
Identities = 203/292 (70%), Gaps = 7/292 (2%)
Strand=Plus/Plus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
|| |||||||| || ||||||||||||||||| ||||||| |||| || |||
Sbjct 775751 AGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAG 775810
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496
||||| ||||| || ||||| || | || || || | ||| || ||| | ||
Sbjct 775811 AAGATACCCTCAACAGCGGCGAATGCAACAAGGCGGTTGGCGAATGTGGA---GTTCTTG 775867
Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556
| | |||||| || ||||| || ||||| || | | |||| | ||||||||
Sbjct 775868 TCGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATG 775927
Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGG--TCCTTGACGTAGGTGTCGATGAGGAGCG 794614
||| ||||||| ||| | | | || || ||| ||| ||||||||||| || |
Sbjct 775928 GCGTTGAAGAGGTA--CCTGCGCTGCTTGGGCTCGCTGATGTATGTGTCGATGAGCAGAG 775985
Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|||||||||||||||| | ||| || || ||| ||||| || || |||||
Sbjct 775986 AGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCA 776037
Score = 104 bits (114), Expect = 4e-16
Identities = 147/206 (71%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
|||||||| | ||| || || | ||| || | | |||||||| || |||||
Sbjct 776042 GCCTCGGGGATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCA 776101
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268
||| ||| ||||| |||||||||||||| ||| ||| |||||||| ||| ||||
Sbjct 776102 TCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGA 776161
Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326
| | ||||| | ||| | |||||||| |||||| |||||||| || ||
Sbjct 776162 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAA 776221
Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352
||||||||||| |||||||||| |||
Sbjct 776222 GCCTCGGCCTTCTTGTACATCTGCCA 776247
>seq16
Length=840418
Score = 127 bits (140), Expect = 3e-23
Identities = 208/300 (69%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||||||||| || |||| ||| | || ||||||||||| | || || || ||
Sbjct 27147 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 27206
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||| ||||| | | ||| | ||| | || || | |||| || | |||
Sbjct 27207 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 27266
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| ||||| || | ||||||||| | ||| || | || || || ||||| ||||| ||
Sbjct 27267 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 27326
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| ||||| |||| || | |||||
Sbjct 27327 GATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCC 27386
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839
|| ||||| | ||| |||| || ||| | ||| ||| |||||| ||||||||
Sbjct 27387 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 27446
Score = 113 bits (124), Expect = 7e-19
Identities = 290/440 (66%), Gaps = 22/440 (5%)
Strand=Plus/Plus
Query 2071584 CTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGG 2071641
||| ||||||||||||| | || |||| || ||||||| ||||||||| | ||
Sbjct 26718 CTCAGTGCACAGGTTGGAG--CTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 26775
Query 2071642 TTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATG 2071701
||| |||||||||| ||||| |||| ||| |||||| |||| ||| | ||||
Sbjct 26776 TTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATG 26835
Query 2071702 GCCGACCAAA--TTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCC----CTNNNNNNNN 2071755
|| |||||| ||| | ||||| || ||| ||||| | ||
Sbjct 26836 GCGTACCAAAGCTTTTGTGCGCGAACA-----GTC-TCGCGACCCTTGTTCTGCTTCTCG 26889
Query 2071756 NNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCG 2071815
| || || || || | | |||| | ||| ||||| || ||||
Sbjct 26890 TAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCG 26949
Query 2071816 GACGGGCAAAAGAGCGACCAGTCGCCGCCAGTC---ACCACGCGGCGCATAAACAGGTCG 2071872
|||||| | || | ||||| |||| ||| | ||||| | || || |||||
Sbjct 26950 TTCGGGCACATCAGTGTCCAGTTGCCGTT-GTCTTGAACACGCTTC--ATGAAGAGGTCA 27006
Query 2071873 CACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 2071932
||||||| |||| ||||||||||| || ||| |||||||||||||||||||||
Sbjct 27007 GGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTG 27066
Query 2071933 TTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 2071992
|||||| || || | | || ||| |||||||| ||||| |||||| ||| |||||
Sbjct 27067 CGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCA 27126
Query 2071993 CCCTTGCGCTTGCCGCCGCC 2072012
|| |||||| ||| ||
Sbjct 27127 CCTGGACGCTTGTTGCCACC 27146
>seq29
Length=353090
Score = 113 bits (124), Expect = 7e-19
Identities = 191/272 (70%), Gaps = 5/272 (2%)
Strand=Plus/Minus
Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445
|| ||||||||| ||| || | ||||||||| || |||||| || || || |||
Sbjct 168130 TCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTTCC-TCCTTGTAGA--CCGGGAACC 168074
Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505
| ||||| | || || ||||| |||||| | | || ||| || ||
Sbjct 168073 ATGGGGTTCATCAAATGTGCGCGCTCCTTGTAGCCGATCTTGGGAAGGACATCCTTTGCG 168014
Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565
| || ||||||||||||||||| || ||||||||| |||| || ||||||| ||||
Sbjct 168013 AGCGCGAAGATCTTGCGCTGGTCTACACCTCCAAACTGGACGTCTACATCGAGGTACTGC 167954
Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTT-GCGGTCCAT 2411624
||||| |||||||||||||| ||||||| ||| || | |||| ||| | ||
Sbjct 167953 TCGTCAAGGGCCTGCATGAGTGGGTAGATGAGTCCACTCAAAGGCGCGTTCTCTGT-TTG 167895
Query 2411625 CTTGACCACCTGGGCGGCGGCCTTTTGCGCCG 2411656
|||||| |||| ||| | ||||| | |||||
Sbjct 167894 CTTGACAACCTCTGCGCCTGCCTTCTTCGCCG 167863
>seq18
Length=821743
Score = 86.0 bits (94), Expect = 1e-10
Identities = 236/356 (66%), Gaps = 12/356 (3%)
Strand=Plus/Plus
Query 2019048 GGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAG 2019107
||||| |||||| |||| || || || ||| |||| | || | ||| | | |||
Sbjct 48510 GGCAAAACCACGTCCATCCTCTGTCTCGCACGCCAGCTCCTCGGTGACGCCTACAAAGAG 48569
Query 2019108 GCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATC 2019167
|| || ||||||||||| || || |||||||| || | |||||||| || | | ||
Sbjct 48570 GCTGTTCTCGAACTCAACGCCTCTGACGAGCGTGGTATCGACGTCGTACGCAACAGGATA 48629
Query 2019168 AA--GCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCC 2019225
|| || || ||| ||| | | || || | || ||| | || ||| | |||| |
Sbjct 48630 AAGGGCTTCGCGC--AGAAGAAAGTCACACTTGCACCAGGCAGGCAAAAGCTCGTCATTC 48687
Query 2019226 TCGATGAGGCCGACTGCCTTACGTCGGCG--GCCCAGCAGGCCCTCCGATCGACCATGGA 2019283
| |||||||| ||| || | || | ||| || ||||| ||||| | ||| |||||
Sbjct 48688 TGGATGAGGCGGACAGCATGAC--CAGCGGTGCGCAGCAAGCCCTGAGGAGGACAATGGA 48745
Query 2019284 AAAGTACA--CCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATC 2019341
| |||| ||||| || |||||||| | || |||||| |||| | | ||||
Sbjct 48746 GATCTACAGTGCAACA--ACACGGTTTGCATTCGCTTGCAACCAGTCGAACAAGATCATT 48803
Query 2019342 GAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCA 2019397
|| | || ||| | || ||||| | | | || ||||| ||||| || ||
Sbjct 48804 GAGCCGCTGCAGTCGAGATGTGCCATACTCAGATACGCTCGCCTTACCGATGCGCA 48859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916237996409681
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