Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq14 111 1e-19
seq10 109 4e-19
seq13 102 5e-17
>seq14
Length=985265
Score = 111 bits (122), Expect = 1e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | |||| ||||||||| ||||| |||||||| || |||| ||||
Sbjct 862977 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 862918
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || |||||||||||||||||||| || |||||||| | || | |||||||||||
Sbjct 862917 TCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 862859
>seq10
Length=1117896
Score = 109 bits (120), Expect = 4e-19
Identities = 107/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| ||||||||||||||| ||||| || ||| |||| | ||
Sbjct 915047 AGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 914988
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||||||||||||||| || |||||||| || | || | |||||||||||
Sbjct 914987 TCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCT 914928
Query 34886 TTTATTTTTTGTTTGACG 34903
| || ||| ||||||
Sbjct 914927 TGGATCTTTGACTTGACG 914910
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || || | || | || ||||| ||||| || |||||
Sbjct 915483 CTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAA 915424
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || || |||||||| | || | ||||||||||| | || || || ||
Sbjct 915423 GATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTTACATT 915364
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| |||| || ||| |||||| || | || ||||||||||| || || ||||| ||
Sbjct 915363 GTCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGAC 915304
Query 34966 AAAGATCTGCAT 34977
|||||||||||
Sbjct 915303 GAAGATCTGCAT 915292
Score = 96.9 bits (106), Expect = 2e-15
Identities = 139/194 (72%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || || | ||| |||||||| ||||| ||||| || | | |||| ||||
Sbjct 914766 AGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCC 914707
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||||||||||| || ||||||||| | || | |||||||||||
Sbjct 914706 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 914647
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || || ||| || || | ||| ||
Sbjct 914646 TGGATCTTGCTCTTGAC--AT--TGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGAT 914591
Query 34942 GGTCTTTCCCGTGA 34955
||||||||| ||||
Sbjct 914590 GGTCTTTCCGGTGA 914577
Score = 89.7 bits (98), Expect = 3e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
|||||| || ||||| ||||| || || | || | || |||| ||||||||||||||
Sbjct 915255 CTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAA 915196
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || || || ||||| | || | ||||||||||| | || || ||||||
Sbjct 915195 GATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTT 915136
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | || | | || || || | || |||||||| || || |||||||| ||
Sbjct 915135 GTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGAC 915076
Query 34966 AAAGATCTGCAT 34977
||||| |||||
Sbjct 915075 GAAGATTTGCAT 915064
>seq13
Length=1001457
Score = 102 bits (112), Expect = 5e-17
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | ||| ||||||||| ||||| ||||| || || |||| ||||
Sbjct 407205 AGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 407264
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| ||||||||||||||||||||||| || || ||||| | || | |||||||||||
Sbjct 407265 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 407323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692486418901
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |