Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq14 111 1e-19 seq10 109 4e-19 seq13 102 5e-17 >seq14 Length=985265 Score = 111 bits (122), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | |||| ||||||||| ||||| |||||||| || |||| |||| Sbjct 862977 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 862918 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||||||||||||||| || |||||||| | || | ||||||||||| Sbjct 862917 TCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 862859 >seq10 Length=1117896 Score = 109 bits (120), Expect = 4e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||||||||| ||||| || ||| |||| | || Sbjct 915047 AGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 914988 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||||||||| || |||||||| || | || | ||||||||||| Sbjct 914987 TCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCT 914928 Query 34886 TTTATTTTTTGTTTGACG 34903 | || ||| |||||| Sbjct 914927 TGGATCTTTGACTTGACG 914910 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || | || | || ||||| ||||| || ||||| Sbjct 915483 CTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAA 915424 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || |||||||| | || | ||||||||||| | || || || || Sbjct 915423 GATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTTACATT 915364 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| || ||| |||||| || | || ||||||||||| || || ||||| || Sbjct 915363 GTCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGAC 915304 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 915303 GAAGATCTGCAT 915292 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||||| ||||| ||||| || | | |||| |||| Sbjct 914766 AGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCC 914707 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 914706 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 914647 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || ||| || || | ||| || Sbjct 914646 TGGATCTTGCTCTTGAC--AT--TGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGAT 914591 Query 34942 GGTCTTTCCCGTGA 34955 ||||||||| |||| Sbjct 914590 GGTCTTTCCGGTGA 914577 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| || || | || | || |||| |||||||||||||| Sbjct 915255 CTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAA 915196 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || || ||||| | || | ||||||||||| | || || |||||| Sbjct 915195 GATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTT 915136 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | | || || || | || |||||||| || || |||||||| || Sbjct 915135 GTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGAC 915076 Query 34966 AAAGATCTGCAT 34977 ||||| ||||| Sbjct 915075 GAAGATTTGCAT 915064 >seq13 Length=1001457 Score = 102 bits (112), Expect = 5e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 407205 AGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 407264 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||||||||||||||||||||| || || ||||| | || | ||||||||||| Sbjct 407265 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 407323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692486418901