Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq16 324 1e-83
seq5 158 1e-33
seq10 111 2e-19
seq14 87.8 2e-12
>seq16
Length=840418
Score = 324 bits (358), Expect = 1e-83
Identities = 1137/1760 (65%), Gaps = 63/1760 (4%)
Strand=Plus/Plus
Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111
|||||| |||||||||||| || ||||||||||||||||| ||||||| | ||
Sbjct 25887 CGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTCAATGATCC---TTCG 25943
Query 148112 CTTC---ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168
|| | ||||||||| | |||||||| || ||| | | || || ||| | ||
Sbjct 25944 CTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGGGAAT 26003
Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228
| | ||| || | | || | || | || ||| | || | | ||
Sbjct 26004 CCTGGCAATCGAACCTCCATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACC 26063
Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288
| |||| ||||| | || || | | || || ||||| ||||| || ||||| ||
Sbjct 26064 CATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGAC 26123
Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348
|| || ||| | |||| || | || || || ||||||||||||||| ||||||
Sbjct 26124 ACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 26183
Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408
| || | || || |||||| || | |||||||||||||| | |||| | |
Sbjct 26184 TGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGC 26243
Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468
|| || |||||||| ||||||||||||||| | ||||| || |||||||| ||
Sbjct 26244 AATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATC 26303
Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528
|||||| || || || || |||| || ||||| | |||| || || | |
Sbjct 26304 GTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTC 26363
Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588
| || | ||||| | ||| || | | ||| || |||||| ||||| |
Sbjct 26364 CTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGAT 26423
Query 148589 GTTGAGCAGCGCCGC--CGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646
||||||| | || || || | ||| | || | || || | || || |||
Sbjct 26424 GTTGAGCTTCTTAGCTTCGTCTGAC--TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCG 26481
Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706
||||| || || || |||| || ||||| ||||| | |||| | |||| || |||
Sbjct 26482 GCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTC 26540
Query 148707 -TCGAGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTG 148764
|||| || ||||||||| |||||||||||| ||||| ||||| || |||| ||
Sbjct 26541 TTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTCAAG-TTGCGGGTGACGACCTGTG 26599
Query 148765 TAATTCTGCGCAGC------AATTCAAA---ATCGTACTTGTCATCTACGATGCATCGGT 148815
| | | | | ||| || ||||| || ||||| || || | | |
Sbjct 26600 TGACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGG-- 26657
Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875
|| ||| | ||| || | ||||| || || |||||| || ||| ||||||| || |
Sbjct 26658 -CAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAA 26716
Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935
|||| | |||||| ||| || ||| || | |||||| || |||||||||| ||
Sbjct 26717 TCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGT 26776
Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT-- 148993
|||| ||||||||||| ||||| | || ||||| || ||| | || | ||
Sbjct 26777 TGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGG 26836
Query 148994 -GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACC------CTCCTGCT 149046
| ||| | || | || ||||| || | | |||||| || || ||
Sbjct 26837 CGTACCAA---AGCTTTTGTGCGCGAACAGTC------TCGCGACCCTTGTTCTGCTTCT 26887
Query 149047 CGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104
|||| | ||| | ||| ||||| | || |||||| |||| |||| || |||||
Sbjct 26888 CGTAGCTCTCGTACAGAGC--TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCA 26945
Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164
|| || ||||||||| || | ||| ||||| | | || |||||||| || || ||
Sbjct 26946 CTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTC 27005
Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224
|| | ||| || ||||| | ||| ||||| || | || || ||| |||
Sbjct 27006 AGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTT 27065
Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284
|||||||| || | || || | ||| |||||||| ||||| | ||| | |||| ||
Sbjct 27066 GCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGC 27125
Query 149285 GCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341
|| ||| ||||| ||||||||||| | ||| | ||||||| | || || |
Sbjct 27126 ACCTGGACGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAG 27185
Query 149342 CATAGGTTCAATG---CCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGC 149398
||| || |||| ||| | | || |||||||| | ||| ||| ||
Sbjct 27186 CATGGG---AATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGC 27242
Query 149399 TCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTC 149458
|| | ||||||||||| ||| || ||||| || ||| ||||| ||| |||
Sbjct 27243 ACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGT 27302
Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518
||| || ||| ||||| ||||||||||| ||||||| | || ||||| ||
Sbjct 27303 CTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGA 27362
Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578
||||||| || | | ||||| || ||||| || || ||||||||| || ||
Sbjct 27363 CGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 27422
Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638
|| || ||| ||||| | ||||| | || ||||||||||| || |||||
Sbjct 27423 CTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCC 27482
Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTT 149695
| || || ||||| ||||| || || || ||||| || || || |||| ||
Sbjct 27483 AACAGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTT---ATGCG 27539
Query 149696 GAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCC 149755
||| | || ||| ||||||||| | |||||| ||| ||||| ||||| ||| |
Sbjct 27540 GAGGAGATATGAACGTTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTC 27599
Query 149756 GTGGTCAATGGCGGCGTCGA 149775
|| | | || || | || ||
Sbjct 27600 GTAGACGATAGCCGAGTTGA 27619
>seq5
Length=1540376
Score = 158 bits (174), Expect = 1e-33
Identities = 353/521 (68%), Gaps = 13/521 (2%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| ||||||||||| ||||| || ||||| || || || ||| |||||||| |
Sbjct 775405 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 775464
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
||| || ||||| |||||| | |||| || || | ||| | | |||||
Sbjct 775465 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAACAGCAG 775524
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529
||||| || || ||||| ||||| | ||||||| || | ||||||||||| |||| |
Sbjct 775525 ACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTA-GCGTTCATGCCGAGCAGAG 775583
Query 120530 CCACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588
| || | | || || | || ||||||| |||||| || || || || ||| ||
Sbjct 775584 CGCATGGTAGTG-CGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGATA 775642
Query 120589 GC---GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645
|| || || | | ||| | || ||||| |||| | | | | || |||||
Sbjct 775643 GCTCTGA-CAGACTCTGGGCTGG--GCTTGTTCTCGAGGAGAG---AGAAGAGAAGGCAG 775696
Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705
|| ||||| ||||||| ||||||||| || || || ||||||||| || || || |||
Sbjct 775697 GCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCG 775756
Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765
||||| | || | |||||| |||| |||| ||| || || ||||| |
Sbjct 775757 GGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATA 775816
Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825
||||| || ||| || || || | ||| | ||| || || | ||||| | ||||
Sbjct 775817 CCCTCAACAGCGGCGAATGCAACAAGGCGGTTGGCGAATGTGGAGTTCTTGTCGGAGATC 775876
Query 120826 CACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866
|| || |||||| |||||||| ||||| | ||| || ||
Sbjct 775877 CATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 775917
>seq10
Length=1117896
Score = 111 bits (122), Expect = 2e-19
Identities = 145/199 (73%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| || | ||| || || || || |||||||| |
Sbjct 915488 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCG--TCTTCCAGCTGCTTAC 915431
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | ||||| ||||||||||| ||||| || || |||||||| |||||| ||
Sbjct 915430 CAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACT 915371
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | ||||||| ||| ||| || || | || | ||| || ||||| ||||
Sbjct 915370 TTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAG 915311
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 915310 TCTTGACGAAGATCTGCAT 915292
Score = 109 bits (120), Expect = 5e-19
Identities = 129/175 (74%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| ||||| || ||||| ||| || ||| ||||||||| ||||| ||
Sbjct 915032 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 914973
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || || || ||||| || ||||||||||| |||||||| ||||||| ||||
Sbjct 914972 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 914913
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638
| | || | ||||||| | ||| || || | |||| ||| ||||||||||
Sbjct 914912 ACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 914858
Score = 107 bits (118), Expect = 2e-18
Identities = 134/181 (74%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| || || ||||| || ||||| ||| || ||| ||| | ||||| ||||
Sbjct 914758 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA-TCCTCAAGCT 914700
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
||||||| ||| | || | ||||||||||| || || ||||| |||||||| |||||
Sbjct 914699 GCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT 914640
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | || | ||||||| || ||| || |||| ||||| ||| || ||||
Sbjct 914639 TGCTCTTGACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCGG 914580
Query 133636 T 133636
|
Sbjct 914579 T 914579
>seq14
Length=985265
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 116482 CACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACACTTCAAC 116541
||||| |||| |||||||||| || ||||||||||| |||||||| |||||||||
Sbjct 796463 CACGTCCACGCCTTTGGCGACAACACAAACGGCTGCACATCCGCCGGTCCCCACTTCAAC 796404
Query 116542 CCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGACCTGGGC 116601
||| | | || ||||| || ||| | | || | || |||||||||||| |||||
Sbjct 796403 CCCCACAACAAGACACACGGTGCCCCCGAGGACGAGGAGCGCCACGTCGGTGACTTGGGC 796344
Query 116602 AAC 116604
|||
Sbjct 796343 AAC 796341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420322621960
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