Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq16 324 1e-83 seq5 158 1e-33 seq10 111 2e-19 seq14 87.8 2e-12 >seq16 Length=840418 Score = 324 bits (358), Expect = 1e-83 Identities = 1137/1760 (65%), Gaps = 63/1760 (4%) Strand=Plus/Plus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 |||||| |||||||||||| || ||||||||||||||||| ||||||| | || Sbjct 25887 CGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTCAATGATCC---TTCG 25943 Query 148112 CTTC---ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 || | ||||||||| | |||||||| || ||| | | || || ||| | || Sbjct 25944 CTGCGAGATCTCCCAGACGGTCTTGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGGGAAT 26003 Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228 | | ||| || | | || | || | || ||| | || | | || Sbjct 26004 CCTGGCAATCGAACCTCCATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACC 26063 Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 | |||| ||||| | || || | | || || ||||| ||||| || ||||| || Sbjct 26064 CATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGAC 26123 Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 || || ||| | |||| || | || || || ||||||||||||||| |||||| Sbjct 26124 ACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 26183 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 | || | || || |||||| || | |||||||||||||| | |||| | | Sbjct 26184 TGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGC 26243 Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468 || || |||||||| ||||||||||||||| | ||||| || |||||||| || Sbjct 26244 AATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATC 26303 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 |||||| || || || || |||| || ||||| | |||| || || | | Sbjct 26304 GTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTC 26363 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | || | ||||| | ||| || | | ||| || |||||| ||||| | Sbjct 26364 CTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGAT 26423 Query 148589 GTTGAGCAGCGCCGC--CGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646 ||||||| | || || || | ||| | || | || || | || || ||| Sbjct 26424 GTTGAGCTTCTTAGCTTCGTCTGAC--TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCG 26481 Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706 ||||| || || || |||| || ||||| ||||| | |||| | |||| || ||| Sbjct 26482 GCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTC 26540 Query 148707 -TCGAGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTG 148764 |||| || ||||||||| |||||||||||| ||||| ||||| || |||| || Sbjct 26541 TTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTCAAG-TTGCGGGTGACGACCTGTG 26599 Query 148765 TAATTCTGCGCAGC------AATTCAAA---ATCGTACTTGTCATCTACGATGCATCGGT 148815 | | | | | ||| || ||||| || ||||| || || | | | Sbjct 26600 TGACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGG-- 26657 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 || ||| | ||| || | ||||| || || |||||| || ||| ||||||| || | Sbjct 26658 -CAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAA 26716 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 |||| | |||||| ||| || ||| || | |||||| || |||||||||| || Sbjct 26717 TCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGT 26776 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT-- 148993 |||| ||||||||||| ||||| | || ||||| || ||| | || | || Sbjct 26777 TGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGG 26836 Query 148994 -GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACC------CTCCTGCT 149046 | ||| | || | || ||||| || | | |||||| || || || Sbjct 26837 CGTACCAA---AGCTTTTGTGCGCGAACAGTC------TCGCGACCCTTGTTCTGCTTCT 26887 Query 149047 CGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104 |||| | ||| | ||| ||||| | || |||||| |||| |||| || ||||| Sbjct 26888 CGTAGCTCTCGTACAGAGC--TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCA 26945 Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164 || || ||||||||| || | ||| ||||| | | || |||||||| || || || Sbjct 26946 CTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTC 27005 Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224 || | ||| || ||||| | ||| ||||| || | || || ||| ||| Sbjct 27006 AGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTT 27065 Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284 |||||||| || | || || | ||| |||||||| ||||| | ||| | |||| || Sbjct 27066 GCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGC 27125 Query 149285 GCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341 || ||| ||||| ||||||||||| | ||| | ||||||| | || || | Sbjct 27126 ACCTGGACGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAG 27185 Query 149342 CATAGGTTCAATG---CCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGC 149398 ||| || |||| ||| | | || |||||||| | ||| ||| || Sbjct 27186 CATGGG---AATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGC 27242 Query 149399 TCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTC 149458 || | ||||||||||| ||| || ||||| || ||| ||||| ||| ||| Sbjct 27243 ACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGT 27302 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 ||| || ||| ||||| ||||||||||| ||||||| | || ||||| || Sbjct 27303 CTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGA 27362 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578 ||||||| || | | ||||| || ||||| || || ||||||||| || || Sbjct 27363 CGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 27422 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 || || ||| ||||| | ||||| | || ||||||||||| || ||||| Sbjct 27423 CTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCC 27482 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTT 149695 | || || ||||| ||||| || || || ||||| || || || |||| || Sbjct 27483 AACAGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTT---ATGCG 27539 Query 149696 GAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCC 149755 ||| | || ||| ||||||||| | |||||| ||| ||||| ||||| ||| | Sbjct 27540 GAGGAGATATGAACGTTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTC 27599 Query 149756 GTGGTCAATGGCGGCGTCGA 149775 || | | || || | || || Sbjct 27600 GTAGACGATAGCCGAGTTGA 27619 >seq5 Length=1540376 Score = 158 bits (174), Expect = 1e-33 Identities = 353/521 (68%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||||||||||| ||||| || ||||| || || || ||| |||||||| | Sbjct 775405 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 775464 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | |||| || || | ||| | | ||||| Sbjct 775465 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAACAGCAG 775524 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529 ||||| || || ||||| ||||| | ||||||| || | ||||||||||| |||| | Sbjct 775525 ACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTA-GCGTTCATGCCGAGCAGAG 775583 Query 120530 CCACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 | || | | || || | || ||||||| |||||| || || || || ||| || Sbjct 775584 CGCATGGTAGTG-CGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGATA 775642 Query 120589 GC---GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645 || || || | | ||| | || ||||| |||| | | | | || ||||| Sbjct 775643 GCTCTGA-CAGACTCTGGGCTGG--GCTTGTTCTCGAGGAGAG---AGAAGAGAAGGCAG 775696 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 || ||||| ||||||| ||||||||| || || || ||||||||| || || || ||| Sbjct 775697 GCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCG 775756 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 ||||| | || | |||||| |||| |||| ||| || || ||||| | Sbjct 775757 GGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATA 775816 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825 ||||| || ||| || || || | ||| | ||| || || | ||||| | |||| Sbjct 775817 CCCTCAACAGCGGCGAATGCAACAAGGCGGTTGGCGAATGTGGAGTTCTTGTCGGAGATC 775876 Query 120826 CACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 || || |||||| |||||||| ||||| | ||| || || Sbjct 775877 CATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 775917 >seq10 Length=1117896 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | ||| || || || || |||||||| | Sbjct 915488 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCG--TCTTCCAGCTGCTTAC 915431 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| ||||| || || |||||||| |||||| || Sbjct 915430 CAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACT 915371 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| ||| ||| || || | || | ||| || ||||| |||| Sbjct 915370 TTACATTGTCGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAG 915311 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 915310 TCTTGACGAAGATCTGCAT 915292 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| ||||||||| ||||| || Sbjct 915032 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 914973 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || || ||||| || ||||||||||| |||||||| ||||||| |||| Sbjct 914972 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 914913 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | || | ||||||| | ||| || || | |||| ||| |||||||||| Sbjct 914912 ACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 914858 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| || ||| ||| | ||||| |||| Sbjct 914758 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCA-TCCTCAAGCT 914700 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | ||||||||||| || || ||||| |||||||| ||||| Sbjct 914699 GCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT 914640 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||||||| || ||| || |||| ||||| ||| || |||| Sbjct 914639 TGCTCTTGACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCGG 914580 Query 133636 T 133636 | Sbjct 914579 T 914579 >seq14 Length=985265 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 116482 CACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACACTTCAAC 116541 ||||| |||| |||||||||| || ||||||||||| |||||||| ||||||||| Sbjct 796463 CACGTCCACGCCTTTGGCGACAACACAAACGGCTGCACATCCGCCGGTCCCCACTTCAAC 796404 Query 116542 CCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGACCTGGGC 116601 ||| | | || ||||| || ||| | | || | || |||||||||||| ||||| Sbjct 796403 CCCCACAACAAGACACACGGTGCCCCCGAGGACGAGGAGCGCCACGTCGGTGACTTGGGC 796344 Query 116602 AAC 116604 ||| Sbjct 796343 AAC 796341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420322621960