Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq16 244 1e-59 seq10 84.2 2e-11 >seq16 Length=840418 Score = 244 bits (270), Expect = 1e-59 Identities = 983/1535 (64%), Gaps = 35/1535 (2%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || ||||| || || || ||||| | | ||| | ||| ||| | ||| Sbjct 26095 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 26154 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | |||| || || |||||| || | Sbjct 26155 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 26214 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || || | ||||| | || || || ||||||| || ||||||||| Sbjct 26215 AGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 26274 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGG----CGGG 147128 | | || || || |||||||| ||||||||||| | || |||| |||| Sbjct 26275 AGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACC----CTGGGATACGGG 26330 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCC--GTCGCGCTGCGCCAATTCACAGCTTGCCTCG 147186 | || || | || |||| || || | |||| | || || | | Sbjct 26331 AGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCG--ATGTCGCATGAGGAAGTG 26388 Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246 || || ||| ||| ||||| ||| |||||| |||| || | ||||| || | Sbjct 26389 AGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGAC 26448 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| |||| | || || | ||||||||||| | ||| || | ||| | ||||| Sbjct 26449 TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATG 26508 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCG-CTATGGGATAGTGGTTGCGATCAAT 147365 ||||| || ||||||||| || ||| | | || ||||||||| || || Sbjct 26509 GGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACCTCGAT 26567 Query 147366 AATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA 147425 |||||||| | ||| || || || | || | | | ||| |||| ||| ||| | Sbjct 26568 GATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAA 26627 Query 147426 -AGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 | || | ||| | || || | || ||| | ||| |||| ||||| || | Sbjct 26628 CACGCCGGCCTTGTAGTCG-ACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACAG 26686 Query 147485 CCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544 | ||| || | || |||||| ||| || || | |||||||||| || ||| Sbjct 26687 CGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGG 26746 Query 147545 CTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 147604 || | || | ||| ||||| || || ||||| ||||| ||| ||||||| | || Sbjct 26747 TACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGT 26806 Query 147605 CGCCGGTCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCC 147661 || |||||| || | |||| ||| ||| | || | || || || || Sbjct 26807 TACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGC---TTTTGTGCGCGAACAG 26863 Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721 || ||| | || || ||||| | |||||||| || || || || |||| Sbjct 26864 TCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGT 26923 Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781 || |||||| ||||| || |||| | ||| |||||||| | ||| || ||| | | Sbjct 26924 AGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTT 26983 Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841 ||| || ||| || || || || | |||||| ||||| | |||||||| || | Sbjct 26984 GAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGA 27043 Query 147842 AATCCTCGGCGCCCATGTT---GCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCC 147898 ||||| ||| ||| ||| || | ||| | || | ||| ||| ||||||| Sbjct 27044 CCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAAGCCAAAGACGTCAGCGTGCC 27100 Query 147899 AGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGC 147955 | || || | ||||| ||| | |||||| |||||| || ||||||||||||| || Sbjct 27101 ATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAGC 27160 Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGG 148015 | | ||||||| | || || | |||||| || || | | || ||||| ||| Sbjct 27161 GAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAGTGC 27220 Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGT 148075 | ||| | ||| || || | ||||||||| | |||||| ||||| || Sbjct 27221 CACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGG 27280 Query 148076 ACTTTGATATGGCAGCGCAATCGCCC--AATGTCGTGTAGATGCCGTCGATGCTGTCGTT 148133 ||| || || || |||| | | | ||| ||| ||||||||||||||||| | Sbjct 27281 TCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTC 27338 Query 148134 TTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAG 148193 || | | | | | || || || ||||||| || | || ||||| ||| | Sbjct 27339 CTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAACAA 27398 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253 || || ||||| || || | |||||| ||| | || ||||| || || | Sbjct 27399 CGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCCTT 27458 Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||||| |||||||||||||| | || || |||||||||||||| ||||| || || Sbjct 27459 CTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGGCGCTC 27518 Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373 ||| || | ||| || ||| |||||| | |||||| || ||| |||||||| | Sbjct 27519 GGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCGAGTGTCTTGAAACCAAAGAA 27578 Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||| | || || | ||||| |||| |||| Sbjct 27579 CTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCG 27613 >seq10 Length=1117896 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| ||||| ||||||||||| | ||||| ||||| Sbjct 915272 ACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTCC 915213 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || |||| |||| ||||||||||| || ||||| || || || || || | Sbjct 915212 AACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGA 915153 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | ||| ||| | | ||||| |||| ||| | || || Sbjct 915152 ATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTG 915093 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || | ||| || ||||| Sbjct 915092 CCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610729346440