Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 206 4e-47 >seq5 Length=1540376 Score = 206 bits (228), Expect = 4e-47 Identities = 356/508 (70%), Gaps = 22/508 (4%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| | |||||| || ||||||||||| || || |||||||| |||||| |||||||| Sbjct 776247 TGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTC 776189 Query 1455839 CGCCGACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 | ||| | ||||| | ||| | | ||| ||||||||| |||||| Sbjct 776188 CAAGGACCTTCACGACTGGAACAAGCGTCTC--AACGATGACGAGCGCTTCTTCATCTCC 776131 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 |||||||||||||| || ||| ||| ||||||||| || ||||||||| | | || Sbjct 776130 CACGTCCTCGCCTTCTT-CGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCG 776072 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 || | || || ||| | || |||||||| | || ||||| ||||| ||| || Sbjct 776071 ATTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGAT 776012 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG-- 1456071 || ||| | ||||| || |||||||| || || |||||||| ||| ||| || || Sbjct 776011 GGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATCAGCGAGCCCAA 775952 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | | | ||| ||||||| ||||||||||| | || | | | || |||||| Sbjct 775951 GCAGCGCAGGT--ACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 775894 Query 1456132 GACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 |||||||| || |||||| ||||| | ||| ||| || ||| | || || | Sbjct 775893 GACTGGGCCCTGCGATGGATCTCCGACAAGAA----CTCCACA-TTCGCCAACCGCCTTG 775839 Query 1456189 TCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247 | | || ||||| || ||||| ||||| ||| || |||| | ||||||| |||| Sbjct 775838 TTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGC 775779 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||| || ||||||||||| Sbjct 775778 TCAAGAAGCGCGGTCTGATGCCCGGTCT 775751 Score = 120 bits (132), Expect = 4e-21 Identities = 231/332 (70%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCC--GTCGACCGA 1456509 ||||| ||||| ||||| || |||| | | | |||| |||||||| | | | | Sbjct 775712 TGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGT 775653 Query 1456510 CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 | || | ||| |||||| || ||||||||||| ||| | ||||| | ||||| | Sbjct 775652 C-TGTCAGAGCT-ATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGC 775595 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 || || || || ||||||||||||| | | ||||||||||| ||||| | | || Sbjct 775594 ACTACCATGCGCTCTGCTCGGCATGAACGCTA-CTCTCATGTGCCAATACATCG-AGTTC 775537 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 ||||| ||||| ||||| ||| |||||| | | ||| ||||| | ||||||| Sbjct 775536 GTCGCTGACCGTCTGCTGTTGGCCCTCGGCAAC-GTCAAGGTCTACCACGCCACCAACCC 775478 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 ||| | |||||| || || || | || ||||||||||| |||||| ||||| Sbjct 775477 CTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGT 775418 Query 1456750 -GGCGAGTACGCCAAGGCCGGCGTCACCGCCA 1456780 ||||| ||| ||||| || |||| |||| Sbjct 775417 CGGCGACTACCAGAAGGCTGGTGTCATGGCCA 775386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177803580304798