Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq5 206 4e-47
>seq5
Length=1540376
Score = 206 bits (228), Expect = 4e-47
Identities = 356/508 (70%), Gaps = 22/508 (4%)
Strand=Plus/Minus
Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838
||| | |||||| || ||||||||||| || || |||||||| |||||| ||||||||
Sbjct 776247 TGGCAGATGTAC-AAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTC 776189
Query 1455839 CGCCGACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893
| ||| | ||||| | ||| | | ||| ||||||||| ||||||
Sbjct 776188 CAAGGACCTTCACGACTGGAACAAGCGTCTC--AACGATGACGAGCGCTTCTTCATCTCC 776131
Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953
|||||||||||||| || ||| ||| ||||||||| || ||||||||| | | ||
Sbjct 776130 CACGTCCTCGCCTTCTT-CGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCG 776072
Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013
|| | || || ||| | || |||||||| | || ||||| ||||| ||| ||
Sbjct 776071 ATTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGAT 776012
Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG-- 1456071
|| ||| | ||||| || |||||||| || || |||||||| ||| ||| || ||
Sbjct 776011 GGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATCAGCGAGCCCAA 775952
Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131
| | | ||| ||||||| ||||||||||| | || | | | || ||||||
Sbjct 775951 GCAGCGCAGGT--ACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 775894
Query 1456132 GACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188
|||||||| || |||||| ||||| | ||| ||| || ||| | || || |
Sbjct 775893 GACTGGGCCCTGCGATGGATCTCCGACAAGAA----CTCCACA-TTCGCCAACCGCCTTG 775839
Query 1456189 TCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247
| | || ||||| || ||||| ||||| ||| || |||| | ||||||| ||||
Sbjct 775838 TTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGC 775779
Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||||||| || |||||||||||
Sbjct 775778 TCAAGAAGCGCGGTCTGATGCCCGGTCT 775751
Score = 120 bits (132), Expect = 4e-21
Identities = 231/332 (70%), Gaps = 8/332 (2%)
Strand=Plus/Minus
Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCC--GTCGACCGA 1456509
||||| ||||| ||||| || |||| | | | |||| |||||||| | | | |
Sbjct 775712 TGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGT 775653
Query 1456510 CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569
| || | ||| |||||| || ||||||||||| ||| | ||||| | ||||| |
Sbjct 775652 C-TGTCAGAGCT-ATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGC 775595
Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629
|| || || || ||||||||||||| | | ||||||||||| ||||| | | ||
Sbjct 775594 ACTACCATGCGCTCTGCTCGGCATGAACGCTA-CTCTCATGTGCCAATACATCG-AGTTC 775537
Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689
||||| ||||| ||||| ||| |||||| | | ||| ||||| | |||||||
Sbjct 775536 GTCGCTGACCGTCTGCTGTTGGCCCTCGGCAAC-GTCAAGGTCTACCACGCCACCAACCC 775478
Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749
||| | |||||| || || || | || ||||||||||| |||||| |||||
Sbjct 775477 CTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGT 775418
Query 1456750 -GGCGAGTACGCCAAGGCCGGCGTCACCGCCA 1456780
||||| ||| ||||| || |||| ||||
Sbjct 775417 CGGCGACTACCAGAAGGCTGGTGTCATGGCCA 775386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177803580304798
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |