Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq10 129 5e-25 >seq10 Length=1117896 Score = 129 bits (142), Expect = 5e-25 Identities = 169/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 35505 TATT-TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAA 35563 |||| ||| ||||| | | | |||||| || | ||| |||||| || |||||||| Sbjct 915524 TATTGTCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAG 915465 Query 35564 TCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCC 35623 || | | ||||| |||| |||||||||||||| || || || | |||||||||||| Sbjct 915464 TCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCC 915405 Query 35624 GAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT 35683 | ||||| | |||||||||| |||||| ||| | | | | | ||||||||| || Sbjct 915404 GGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGAC 915345 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || || || || || || | ||| || || || |||||||| Sbjct 915344 TCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||| | ||| ||||||||| |||||||| || | Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| |||||| || || || || | ||||| ||||||| |||| Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACC-GTGTCGCTCGATTCCAC 35688 | | |||||||||| ||||| ||| | |||| || |||||||| |||||||| Sbjct 915170 ATACCCTCCTTGTCCTGAATCTTCGACTTGAC-GTTGTCAATAGTGTCGCTTGATTCCAC 915112 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||| || || || |||| || || || || || ||||| Sbjct 915111 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 98.7 bits (108), Expect = 9e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| |||||| || | || || |||||||| || || || Sbjct 914745 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAG 914686 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | |||| || |||||||||| |||||| ||| | | | Sbjct 914685 ATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTG 914626 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | |||||| || || ||||| | ||||| || || || || Sbjct 914625 TCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 914579 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| || ||| || |||| || || ||||| || || || Sbjct 915027 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAA 914968 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||| |||| ||| | || ||||||||| ||||||| ||| | || Sbjct 914967 GATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGA-CGT 914909 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 || | | |||||| || || ||||| | ||||| || || || |||| Sbjct 914908 TGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 914858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793154841320