Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq16 143 3e-29 seq10 114 1e-20 >seq16 Length=840418 Score = 143 bits (158), Expect = 3e-29 Identities = 540/839 (64%), Gaps = 15/839 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||||||||| |||| || || || |||||||||||||| ||||| || ||| | Sbjct 27509 CAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGATGACATCGAGAAGGCCATC 27450 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | |||||| || | || || ||||| ||||| || |||| | Sbjct 27449 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 27390 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 ||||||||| | || ||| |||| || || || | | |||| || |||||| Sbjct 27389 GCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAGC 27330 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802 ||||||||||||||| |||| || | || || || || ||||| || ||||| Sbjct 27329 ATCGACGGCATTTACGACACACT-CAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 27271 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || || || ||||| || | | || || | || ||||| ||| ||||| Sbjct 27270 TATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATACATCGGTGGCACTAACGG 27211 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 || | | | ||| | |||||| | || || | ||| ||| | | || |||| || Sbjct 27210 AACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCGA 27151 Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| || ||||| ||| ||| |||||||| | ||||| |||||||| || Sbjct 27150 CCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGA 27091 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGA 8039 | | | | | || | ||||| ||| || || || | || ||||| Sbjct 27090 CGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGA 27031 Query 8040 TCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACA 8099 ||| |||| || ||||| | || || || || |||| ||| ||||| | ||| | Sbjct 27030 TCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAAGACAACGGCAA 26971 Query 8100 ATGGTCGCTCATGTGCCCCGATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158 ||| | || ||||| ||||| || |||||| | | || |||||| | ||| Sbjct 26970 CTGGACACTGATGTG-CCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAAT 26912 Query 8159 TTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAG--TGAAAGC 8216 | ||| ||||| | ||||| || | | | | | || || || || Sbjct 26911 TCGAAGCTCTGTACGAGAGCTACGA----GAAGCAGAACAAGGGTCGCGAGACTGTTCGC 26856 Query 8217 GCGC--GACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274 || | | || |||||| | || || | ||| || |||| || | ||| Sbjct 26855 GCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATG 26796 Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334 || ||||| |||||||||||| ||| ||||| || | ||| | || ||||| | || Sbjct 26795 CTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGC 26736 Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393 ||| |||||| |||| ||||| |||||| ||| || || || || || |||||||| Sbjct 26735 TCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGCAA 26677 >seq10 Length=1117896 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||||| || || || |||||||| || |||||||||||| Sbjct 914781 CCTCCACGAAGGCGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 914722 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| || || ||||| |||||||| || || || Sbjct 914721 AAGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 914662 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | |||||||| || || || Sbjct 914661 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGAGGACTCAACC 914602 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || ||||| || ||||| Sbjct 914601 TCGAGGGTGATGGTCTTTCCGGT 914579 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| | ||||| ||||| ||||||||||||||| | |||| | ||| ||| Sbjct 915044 ACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 914985 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || || || || | || |||||||| || || ||||| || || ||||| Sbjct 914984 AGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGG 914925 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||| ||||| ||| | |||||||| || || || || ||||| ||||| || Sbjct 914924 ATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTG 914865 Query 134685 CCGGT 134689 ||||| Sbjct 914864 CCGGT 914860 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | || || || || |||||||| ||||||||||| Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||| || || || || || | |||||| || || || || Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | |||||| |||||||| Sbjct 915170 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 915111 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || ||||| |||||||| Sbjct 915110 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397900919080