Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq16 286 4e-72 seq5 116 5e-21 >seq16 Length=840418 Score = 286 bits (316), Expect = 4e-72 Identities = 1122/1741 (64%), Gaps = 35/1741 (2%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGA 110421 |||||||||||||| || |||||||| || ||||| || || | |||||||||| Sbjct 25789 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 25847 Query 110422 GAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCA--TACTTTGACTTTGGTCAATG 110479 || |||| ||| || || | |||| || ||| | ||| ||| ||||||||| Sbjct 25848 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGAC--TGGTCAATG 25905 Query 110480 AAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTT--CATCTTAATTTCCCAAACTG 110537 || || || | || ||||| |||||| |||||| | | || ||||| || | Sbjct 25906 AAAGCACCACGGTCAGCGGCCATCTCAATG--ATCCTTCGCTGCGAGATCTCCCAGACGG 25963 Query 110538 TGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG--ATGGAACCCCC 110595 | || || |||| | || || ||||| | || || || |||| || ||||| || Sbjct 25964 TCTTGTAAAGGGTCTTTGTCTCCTCAGGGATGT-TGGGA-ATCCTGGCAATCGAACCTCC 26021 Query 110596 CGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655 | | || | | |||||| | || ||||| ||||| || | ||||| || Sbjct 26022 ATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTT 26081 Query 110656 GACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTT 110715 || | |||||||| |||||||| |||||| | | |||||||| Sbjct 26082 GAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTT 26141 Query 110716 TGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 110775 | |||||||| || ||||| || || || |||| || |||| |||||||| ||||| Sbjct 26142 GGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGG 26201 Query 110776 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 ||| ||||| || | || ||| || | ||| | ||| || ||||| ||| Sbjct 26202 CATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGA 26261 Query 110836 ATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 |||||| | || | || | ||| | || || |||||| || |||| || | || Sbjct 26262 CGCCCAGTCCCAGAGGTCAG-TAGGTGTGACATT-CCACATATCGTACTGGAGGATACCC 26319 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 110953 ||||| ||||||| || || |||| | || | ||| | | | || | || || Sbjct 26320 TGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCAT 26379 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013 | || | || || || ||||| || ||||| | || | || ||| ||| Sbjct 26380 GAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCT 26439 Query 111014 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 111073 || ||||| || || | |||| | || |||| || ||||||||||||||| Sbjct 26440 TCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCC 26499 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 111133 | ||| || |||| ||| || | || || || || || || || || Sbjct 26500 ATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTG 26559 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193 || |||| ||| | || ||| || | || ||||| ||| || || || | Sbjct 26560 ACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTG 26619 Query 111194 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 | ||||| || | || | | |||| | || ||||| | || ||||| ||| Sbjct 26620 AAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTG 26679 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 |||||||| |||||| | | |||||||| | ||| || || || | |||||| || Sbjct 26680 CAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTG 26739 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATG 111373 || || || | ||||| ||||| ||||| |||||| || |||||||||||||| Sbjct 26740 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATA 26799 Query 111374 TAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGT 111433 |||| | || ||||| ||||||| | || || || | ||||| | || | Sbjct 26800 AAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCGA 26859 Query 111434 ACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 ||| | || | ||| | || | |||||| | ||| || ||||| || || || Sbjct 26860 ACAGTCTCG-CGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTC 26918 Query 111493 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| | |||| ||| || || || || || || | || | ||| | || Sbjct 26919 ACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTT 26978 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 111612 || | ||| ||||||||||| ||||| ||||||||||| | | |||||||| | | Sbjct 26979 GTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGC 27038 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 || |||| || | || ||||| || | |||||||| | | || || ||||| Sbjct 27039 GCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTG 27098 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 111726 ||||||||| || |||| |||| | || | ||||| ||| | || | || Sbjct 27099 CCATGGCTCGAGGTAGATGGCGAAGGCACC---TGGACGCTTGTTGCCACCCTGGTCGAC 27155 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 |||||| || ||| ||| |||| || ||||| ||||| | ||||| ||| || || Sbjct 27156 ATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTT 27215 Query 111787 TGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || |||| || ||| | | || | | || | || | |||||||| Sbjct 27216 AGTGCCACCGATGTATGAG--CCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCG 27273 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 ||||| ||| ||||| |||||| | | || || | || || |||| ||| | Sbjct 27274 CCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTG 27333 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 |||||||| || |||| |||||||| ||||| || ||| |||||| || || ||| Sbjct 27334 TCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTG 27393 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAA 112023 || | || || | ||||| |||| ||| ||| ||||| | |||||| ||||| | Sbjct 27394 AACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGAT 27452 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | || ||||| || ||||| ||||| | || || ||||||| ||||| ||||| Sbjct 27453 GGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 27512 Query 112084 G 112084 | Sbjct 27513 G 27513 >seq5 Length=1540376 Score = 116 bits (128), Expect = 5e-21 Identities = 301/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| ||| | || |||||| ||||| Sbjct 775409 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTCCATG 775468 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACC---CCAACTTGTTTGAG 122483 ||||| || || || | |||| | | || || || ||||| || Sbjct 775469 AAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC-------AG 775521 Query 122484 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 122543 ||||| || | || |||| ||||| | | |||| || |||||| |||| || Sbjct 775522 CAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGCAG 775581 Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 ||||| |||||||| | |||| | | ||||||||| || || || | | ||| Sbjct 775582 AGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGAT 775641 Query 122604 GGCGTGGATAGTTTCGGTAGTGGGTCTATTA-CGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 || || || || | |||| | || || || |||||| ||| | Sbjct 775642 AGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGA-GAAGAGAAGGCAGGCGA 775700 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| | ||||| || ||||| || || || || ||||| |||||| |||| Sbjct 775701 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCA 775760 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | ||||| |||||||| | ||| | || | | ||| || ||| |||||||||||||| Sbjct 775761 TCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCT 775820 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 | ||| || || |||| |||||| | |||||| Sbjct 775821 CAACAGCGGCGAATGCAACAAGGCGGTTGGCGAA 775854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031379818400