Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq16 257 2e-63 seq5 89.7 6e-13 >seq16 Length=840418 Score = 257 bits (284), Expect = 2e-63 Identities = 1117/1741 (64%), Gaps = 37/1741 (2%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || |||||||| || ||||||| || | ||||| || | Sbjct 25789 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTG 25848 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | || || | |||| || ||| | || || || || ||||| Sbjct 25849 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAA 25908 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTCC 118014 || || || || ||||| ||||| | |||||| | ||| ||||| || ||| Sbjct 25909 GCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTCT 25966 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG--ATGGATCCACCCGC 118072 |||| ||| |||| | || || ||||| | || || ||| || || || || | Sbjct 25967 TGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGG-GA-ATCCTGGCAATCGAACCTCCATC 26024 Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 || || | | |||||| | || ||||| ||||| || | || |||| | Sbjct 26025 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAG 26084 Query 118133 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 | ||| | ||||||| |||||||| |||||| || | |||||| ||| Sbjct 26085 CAACCATGGGT--TGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTG 26142 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||||||||| |||||||| ||||| |||| || || | |||||||| || ||| Sbjct 26143 GAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGC 26202 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 |||||||| ||||| || ||| || | ||| | || ||| ||||| |||| Sbjct 26203 ATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGAC 26262 Query 118311 TCCCAGTCGTAGTTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 ||||||| || | || | || | | | ||||||||| ||||||||||||| | Sbjct 26263 GCCCAGTCCCAGAGGTCAG-TAGGTGTGACATT-CCACATATCGTACTGGAGGATACCCT 26320 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC 118428 |||| | || ||||| || | |||| || || || ||| || | ||| | Sbjct 26321 GGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATG 26380 Query 118429 TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCT 118488 | ||| || || || || || || || || || | || | ||| || | Sbjct 26381 AGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTT 26440 Query 118489 CGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 118548 |||| || || || | || ||| | || |||| || |||||||| ||||| | Sbjct 26441 CGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCA 26500 Query 118549 GGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGG-TCTCC-ACGGGATAAAAATT 118606 || || || || || | | || || | | | | ||| | || || || || Sbjct 26501 TACCGATGGGTCGGTGGCGGAAGTTG--CTGCGGCGTGCCTCTTCGACAGGGTAGTGGTT 26558 Query 118607 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 118666 ||||| | | | || | || |||||| |||| ||||| ||| || ||||| | Sbjct 26559 GACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTT 26618 Query 118667 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 118726 | | ||||| || | || | | |||| | ||| ||||| | || |||| || Sbjct 26619 GAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTT 26678 Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786 || |||| | |||||| | | |||||||| | ||| || ||||||| ||| || || Sbjct 26679 GCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCT 26738 Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846 ||||| || | |||||| || || ||| ||| || || |||||||| ||||| Sbjct 26739 GCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCAT 26798 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGG 118906 | || | || ||||| || || | || || || || | ||| | | || | Sbjct 26799 AAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCG 26858 Query 118907 CACAGTGGCGTTGGC-TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTT 118965 ||||| || | | | | |||| ||||| | ||| || ||||| || |||| Sbjct 26859 AACAGTCTCGCGACCCTTGTTCTGCTTC-TCGTAGCTCTCGTACAGAGCTTCGAATTCTT 26917 Query 118966 CACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCAC 119025 |||| | | || | ||| || || || | ||||| | || | ||| | || Sbjct 26918 CACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGT 26977 Query 119026 CCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGAC 119085 || | ||| ||||||||||||||||| || ||||| || || |||||||||| ||| Sbjct 26978 TGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAG 27037 Query 119086 AGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGT 119145 ||| | || || | || || || |||| || | ||| | | || || |||| Sbjct 27038 CGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGT 27097 Query 119146 GCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAGCCTGGTTTA 119199 |||| || || ||||| | |||| | | ||| |||| ||| |||||| | Sbjct 27098 GCCATGGCTCGAGGTAGATGGCGAAGG-CACCTG--GACGCTTGTTGCCACCCTGGTCGA 27154 Query 119200 CATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCAT 119259 |||| | |||||| ||| ||||||| ||||| ||||||| ||||| ||| || | Sbjct 27155 CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGT 27214 Query 119260 TTGTCCC-CCGAA-TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACC 119317 | || || |||| || ||| | | | || | | ||| | || | |||||||| Sbjct 27215 TAGTGCCACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACC 27272 Query 119318 CCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGA 119377 || || ||| ||||| ||| || | |||| || |||| || || ||||| Sbjct 27273 GCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCT 27332 Query 119378 GTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTT 119437 ||| |||| | ||||||||||||| ||||||||| || ||||| || ||||| Sbjct 27333 GTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTT 27392 Query 119438 GAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCA 119496 ||| | || || | ||||| |||| ||| ||| ||||| | |||||||||||| | Sbjct 27393 GAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGA 27451 Query 119497 AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGG 119556 | | ||||| || |||||||| || | | || ||||| | ||||| ||| | Sbjct 27452 TGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTG 27511 Query 119557 G 119557 | Sbjct 27512 G 27512 >seq5 Length=1540376 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||||||||||||||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 775715 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 775774 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || || ||||||||| ||||| ||| ||||| Sbjct 775775 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 775834 Query 130154 GCAA 130157 |||| Sbjct 775835 GCAA 775838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434589295240