Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq16 298 6e-76 seq5 113 5e-20 >seq16 Length=840418 Score = 298 bits (330), Expect = 6e-76 Identities = 1126/1743 (65%), Gaps = 39/1743 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| ||||| ||||||| || || | || ||||| || || ||||| || | Sbjct 27513 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGATGACATCGAGAAGGC 27454 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| |||||| | ||||| ||| ||| |||| ||||| | || || | | Sbjct 27453 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 27395 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || |||||| ||| |||||||| |||||||| |||| || ||||||| Sbjct 27394 TCAACGCGGGCACACCATCACCACAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 27335 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| |||| || || | || || | | |||||| ||||| ||| |||| Sbjct 27334 ACAGCATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 27275 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 104517 | |||||||| | || | || | | || | | ||| || |||| || || Sbjct 27274 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGG--CTCATACATCGGTGGCAC 27217 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || ||| ||||| | ||||| ||||| || |||| ||| ||| || ||||| Sbjct 27216 TAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 27157 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 ||| | || | ||| ||||| | || | |||| |||| || |||||||| Sbjct 27156 TGTCGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTCGCCATCTACCTCGAGCCATG 27100 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CG 104689 |||||| || || | | |||||||| |||| ||||| || | ||||||| || Sbjct 27099 GCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG 27040 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || | ||||||||||||| |||||| |||||||| || |||||||||||| | ||| | Sbjct 27039 CGCT--CGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAA 26982 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 || | ||||| ||| | || | || || || || ||||| ||| |||||| | Sbjct 26981 GACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTAC 26922 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC-TGCGAC 104868 ||||| || || ||||| || ||| | ||||| |||| || | | | | | ||| Sbjct 26921 GGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGA-GAAGCAGAACAAGGGTCGCGAGAC 26863 Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 || | || | | ||| | || || || || | || ||||||||||||| || Sbjct 26862 TGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCC 26803 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | ||||| ||||| ||||| || |||| ||||| || || ||||| | ||| || Sbjct 26802 CTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCAT 26743 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || ||||| || || || || || |||| | || | |||||| ||||| Sbjct 26742 CCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGT 26683 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 105107 || ||| | || || | || || || | ||| || | || || | |||| Sbjct 26682 TTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACA-AGGCCGGCGTGTTTG 26624 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | || ||||||||||| || | |||||| ||| | |||| | || | Sbjct 26623 ACTTCAAGAAGCTCCACGAAGTCACACAGGTCGTCACCCGCAACTTGAACAAGATCATCG 26564 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || ||||| || || || || || | | ||||| || || | Sbjct 26563 AGGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCG 26504 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 || | |||||||| ||||| || |||| ||| | |||| | || || || | Sbjct 26503 GTATGGGTGTTCAAGGTCTTGCCGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAG 26444 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||||||| ||| | |||| | || || |||||||| || || || ||||| Sbjct 26443 ACGAAGCTAAGAAGCTCAACATCCAAATCTTCGAGACCATCTACCATGCTGCTCTCACTT 26384 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | | || | ||| ||| |||||| || | |||| || || ||||| | | Sbjct 26383 CCTCATGCGACATCGCAAAGGAACTTGGTCCTTACAAGACCTACGAAGGATCTCCCGTAT 26324 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTG 105465 | || || | || || | ||||||| |||| || | ||| | || | || ||||| Sbjct 26323 CCCAGGGTATCCTCCAGTACGATATGT-GGAATGTCACACCTA-CTGACCTCTGGGACTG 26266 Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 || |||| ||||| || ||| | ||| | || ||| || ||||| || || Sbjct 26265 GGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGCAACTCGCTGCTCATTGCACC 26206 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 |||||||| |||||||| |||| || |||| || || || ||||| || || ||||| Sbjct 26205 CATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACAC 26146 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT-- 105643 | ||||||||| | | |||||| || ||||| | |||||||| ||| Sbjct 26145 CTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAAC--CCATGG 26088 Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG 105703 | | | ||||| || || ||||| ||||| || | |||||| | | || | Sbjct 26087 TTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATC 26028 Query 105704 AAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTAC 105763 | || ||||| ||| | ||| | || || | || | |||| | ||| Sbjct 26027 GCCGATGGAGGTTCGATTGCCAGGATTCCCAACATCCCTGAGGAGACAAAGACCCTTTAC 25968 Query 105764 CGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || || ||||| ||| | |||||| ||||||| |||||||| || |||||| Sbjct 25967 AAGACCGTCTGGGAGATCTCGCAGCGAAGGA--TCATTGAGATGGCCGCTGACCGTGGTG 25910 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 |||||||| | |||| ||| | || || |||| | || || ||| ||| Sbjct 25909 CTTTCATTGACC--AGTCTCAGTCGCTAAACATCCACATGAAGGAGCCTACTATGGGCAA 25852 Query 105880 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 105939 | || ||||||||||| | | |||||| |||||||| || || ||||| || || Sbjct 25851 GATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTCAAGACTGGCATGTACTATCT 25792 Query 105940 CCG 105942 ||| Sbjct 25791 CCG 25789 >seq5 Length=1540376 Score = 113 bits (124), Expect = 5e-20 Identities = 284/429 (66%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 ||||| || ||||||||||||||||||| ||||| ||| | | || | |||||| Sbjct 775836 GCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTC 775777 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||||||| Sbjct 775776 AAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAG 775717 Query 94936 GGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAACCAACGACT 94995 || | ||| || || || || ||| | | | || || | | Sbjct 775716 GGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCA 775657 Query 94996 GAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTCATATTGGAT 95055 ||| || | |||| | | |||||||| ||||||||| | | ||| | || Sbjct 775656 GAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGAC 775597 Query 95056 GCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAATATATTGAGTAT 95115 || || ||||||||||| |||| ||||| || |||| |||| || |||| Sbjct 775596 GCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTC 775537 Query 95116 GTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCA-ATTTGGAACTCCAAGAATCC 95174 || |||| | || || | || || | || | | | || ||| || || Sbjct 775536 GTCGCTGACCGTCTGCTGTTGGCCCTC-GGCAACGTCAAGGTCTACCACGCCACCAACCC 775478 Query 95175 ATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGT 95234 || |||||||||||||||||| || | || ||||| ||||||||||| ||| | || Sbjct 775477 CTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGT 775418 Query 95235 TGGGGACTA 95243 || ||||| Sbjct 775417 CGGCGACTA 775409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260224029960