Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq10 136 1e-26 >seq10 Length=1117896 Score = 136 bits (150), Expect = 1e-26 Identities = 158/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||||||||| || || || || || || || | ||||| || ||||| | Sbjct 915498 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCA 915440 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||| ||||| ||||| ||||| || |||||||| || || || ||||| | Sbjct 915439 GCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGA 915380 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAACTGTCTTT 140708 | || | |||||||| || |||| || | ||| || ||||| | ||||| |||||| Sbjct 915379 TCTTGGACTTTACATTGTCGATCGTGTC-GCTGGACTCGACTTCCAATGTAATGGTCTTT 915321 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || || || |||||||| Sbjct 915320 CCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Score = 127 bits (140), Expect = 6e-24 Identities = 707/1122 (63%), Gaps = 21/1122 (2%) Strand=Plus/Minus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590 |||||| || || ||||| ||||| || || |||| ||||| ||| || | || | Sbjct 515860 ACCCGAGGAGATCTCATCTATGGTCTTGACCAAGATGAGGGAAACTGCCGAGTCCTACCT 515801 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 |||| || || | | ||||| | ||||| || || || || || || | || || Sbjct 515800 CGGTGGCACCGTTAACAACGCTGTCGTCACTGTTCCCGCATACTTCAACGACTCGCAACG 515741 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 | || || || |||||||| |||||| || | || || || | || || || || Sbjct 515740 TCAGGCTACCAAGGATGCTGGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGA 515681 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTAT 349770 || ||||| || || || || || || ||||| || | || || || || | Sbjct 515680 GCCTACTGCCGCTGCCATCGCCTACGGTCTTGACAAGAAGACCGAGGGTGAGCGCAACGT 515621 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGG 349830 ||||| || || || ||||||||||| || ||||| || || | || | || ||||| Sbjct 515620 CCTTATCTTCGACTTGGGTGGTGGTACCTTCGATGTCTCCCTCTTGACCATCGAGGAGGG 515561 Query 349831 AATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAA 349890 || || || || || | ||||| ||||| || || | ||||| || || || || || Sbjct 515560 TATCTTCGAGGTCAAGTCCACTGCCGGTGACACTCACTTGGGTGGTGAGGACTTCGACAA 515501 Query 349891 TCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA 349950 |||||||| || || || || || |||||| |||| | || | | || Sbjct 515500 CCGTCTCGTCAACCACTTCACCAACGAGTTCAAGCGT-AAGC-ACAAGAAGGACTTGACC 515443 Query 349951 T--AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 | || || | || | ||||| || |||| || || || | || ||||| | | Sbjct 515442 TCCAACGCTCGTGCTCTCCGTCGTCTCCGAACCGCTTGCGAGAGGGCCAAGCGCACTCTG 515383 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 || ||| | | || ||||| || || || || || || || || | || |||| Sbjct 515382 TCCTCTTCCGCTCAGACCTCCATCGAGATCGACTCCCTGTACGAGGGTATCGACTTCTAC 515323 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATG 350128 | || || |||||||| || ||||| | || ||| || || | | || ||| Sbjct 515322 ACCAGCATCACCCGTGCTCGTTTCGAAGAGCTCTGCCAGGACCTCTTCCGCTCCACCATG 515263 Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAAT-GTCCAAAAATCAGATTGATGAAGT 350187 || || || || || | ||||| || || | | | || | | | || | Sbjct 515262 GAGCCCGTCGAGCGTGTCCTCCGCGATGCTAAGATCGACAAGTCCTCCG-TCCACGAGAT 515204 Query 350188 AGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTT 350247 || || || ||||| || || ||||| || || || || || | | || || || || Sbjct 515203 TGTCTTGGTCGGTGGATCCACCCGTATCCCCAAGGTCCAGAAGATGGTCTCCGACTTCTT 515144 Query 350248 TAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGC 350307 || ||||| || || | || || || || ||||| ||||| || || ||||| || Sbjct 515143 CAACGGCAAGGAGCCCAACAAGTCCATCAACCCCGATGAGGCTGTCGCCTACGGTGCCGC 515084 Query 350308 TGTTCAGGCATCTATTTTATCTGG----AAAT-----AAGAGTTCTAAAATTGATGATCT 350358 || ||||| |||| | ||||| | || ||| |||| || |||| Sbjct 515083 CGTCCAGGCTGCTATCCTGTCTGGTGACACATCCTCCAAG---TCTACCTCCGA-GATC- 515029 Query 350359 ATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGAC 350418 | || || || || | || ||||| | || | || || |||||| || ||||| Sbjct 515028 -CTGCTTCTCGACGTCGCGCCGCTTTCCATCGGTATCGAGACCGCTGGTGGTGTCATGAC 514970 Query 350419 TGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATT 350478 || ||| || | || | || | || || || |||||| | || || || || Sbjct 514969 TGCTCTCATCAAGCGCAACACCACCATCCCCACCAAGAAGTCCGAGGTCTTCTCCACCTT 514910 Query 350479 TGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAA 350538 || || ||||| | || || || || | || ||||| ||||||||||| || Sbjct 514909 CAGCGACAACCAGCCCGGTGTGCTTATCCAGGTCTACGAGGGTGAGCGTGCTCGCACCAA 514850 Query 350539 AGATAATAATAAACTTGGAGAATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGT 350598 || || || || ||| | || || | | || ||||| ||| | || || Sbjct 514849 GGACAACAACCTGCTCGGAAAGTTCGAGCTTACCGGTATCCCACCTGCTCCTCGTGGTGT 514790 Query 350599 TCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 ||| ||||| || ||| | |||||| |||| | || ||||| Sbjct 514789 TCCCCAGATCGAGGTCACCTTCGATGTTGACGCCAACGGTAT 514748 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | |||||| |||||||| ||||| || || || || Sbjct 915294 CATACCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTC 915235 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||| | || ||||| || ||||| ||||| || || || || Sbjct 915234 TGAGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGG 915175 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || || || ||||| | || || ||| Sbjct 915174 AGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTC 915115 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || || ||||| Sbjct 915114 CACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 114 bits (126), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| || | || ||||| || ||||| || | Sbjct 915070 TTTGCATACCACCACGCAGGCGGAGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGT 915011 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || ||||| ||||| || ||||| || |||||||||| Sbjct 915010 AGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGAT 914951 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || || || || || || | || || || || || | || |||| Sbjct 914950 CCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATG 914891 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||||| ||||| || | ||||| ||||| Sbjct 914890 ACTCAACCTCAAGAGTGATGGTCTTGCCGGT 914860 Score = 104 bits (114), Expect = 7e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || ||||| || ||||| || || || || || || || Sbjct 914785 CATACCTCCACGAAGGCGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTC 914726 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || || ||||| ||||| || || || || ||||| | || ||||| || || Sbjct 914725 GGACAAGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGG 914666 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 ||||| || || || ||||| || || ||| || ||||| || || | || || | | Sbjct 914665 GGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATAGTGTCGGAGGACT 914607 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 |||| || || || | ||||||||||| | ||| Sbjct 914606 CAACCTCGAGGGTGATGGTCTTTCCGGTGACTGT 914573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252866278437