Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq16 250 3e-61 seq10 116 4e-21 >seq16 Length=840418 Score = 250 bits (276), Expect = 3e-61 Identities = 390/545 (72%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||||||| ||| ||||||||||| || |||||| |||| || |||||||| Sbjct 27449 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 27390 Query 53303 GCTGGTACGA-ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || |||||| || |||||| |||||||| | | |||||||| ||| Sbjct 27389 GCGGGCACACCATCACCA-CAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAG 27331 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||||||||| ||||| || |||||| ||||| ||||||||| | || || Sbjct 27330 CATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 27271 Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||| || || || ||| | | | ||||| | ||| || ||| || || |||| Sbjct 27270 TATTGGCCTCAACGTGCACCG-CATTCGTGCTACTGGCTCATACATCGGTGGCACTAACG 27212 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | |||| || | || |||||||| || | ||||||||| || || || ||| Sbjct 27211 GAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCG 27152 Query 53541 ACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 |||||||||| ||||| | ||| | | |||||||||||||||||||| |||||||| Sbjct 27151 ACCAGGGTGGCAACAAGCGTCCAGGTGCC-TTCGCCATCTACCTCGAGCCATGGCACGCT 27093 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659 ||| | | | || || || ||||| ||| || || | || ||| | ||| || Sbjct 27092 GACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGC 27033 Query 53660 GACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GAC 53716 || || || ||| |||||||||||||| |||||||||||| || ||| ||| || Sbjct 27032 GATCTCTTCTAC-GCTCTGTGGATTCCTGACCTCTTCATG--AAGCGTGTTCAAGACAAC 26976 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | | ||| ||||||||||||||||||||||| |||||| | |||||||||||| Sbjct 26975 GGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAA 26916 Query 53777 GAGTT 53781 || || Sbjct 26915 GAATT 26911 Score = 125 bits (138), Expect = 8e-24 Identities = 301/448 (67%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 |||||||||| |||||| | || || |||||||| || || || | ||||| |||||| Sbjct 26230 TACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCA 26171 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601 |||||||| |||||||| ||||| |||||||||| ||||| ||| || |||| Sbjct 26170 ACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTG 26111 Query 55602 AGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC 55661 |||| | ||||| | |||||||||| | || |||| Sbjct 26110 AGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTG 26051 Query 55662 CGCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGT--CCAGAAT-CTGGAGATT 55717 | | || |||| ||| | || || || || || | |||| || | | || Sbjct 26050 AGAACATGAAGAACCGTATCATCGCCGAT-GGAGGTTCGATTGCCAGGATTCCCAACATC 25992 Query 55718 CCTCTGCGTCTCAAGGAGA-TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776 ||| | | ||| || ||||| ||| || |||||||| | ||| || | || Sbjct 25991 CCTGAG-GAGACAAAGACCCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCAT 25933 Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 ||| ||| ||||| |||||||| | ||| |||||||| ||||| || |||||| ||| Sbjct 25932 TGAGATGGCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACAT 25873 Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 | || | ||| | ||| |||| | | || ||||||||| || |||||| || || Sbjct 25872 GAAGGAGCCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCT 25813 Query 55897 CAAGACGGGTATGTACTATCTGCGGACC 55924 |||||| || ||||||||||| || ||| Sbjct 25812 CAAGACTGGCATGTACTATCTCCGTACC 25785 >seq10 Length=1117896 Score = 116 bits (128), Expect = 4e-21 Identities = 304/449 (68%), Gaps = 16/449 (4%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACC-CTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAA 117210 ||||| || ||||| ||| | ||| || || |||||| | |||| | || || | | Sbjct 432302 CCAGTACCAATACCGCTC-GAACCGTTGATGAGAATCGTGGGCAGAATCGGGACAAACAT 432244 Query 117211 CTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTG-TCACTCG 117269 ||| ||||| | || ||||||| | | ||||||| |||| |||| ||| ||| Sbjct 432243 CTCGGGCTCGATCTTGTGACCGTCCGACTCGCCGTACTTCAGCA----ATTGGTCA-TCG 432189 Query 117270 -GATCGAATATG-TTCTTGGTCC--ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTT 117325 | || | | ||| | || | | || | ||||| ||| |||| || | | ||| Sbjct 432188 TGGGCGTGGAAGATTCGTCGTGCGAATGGCGAAAGGCGTGTGTAAATATACCTGGCGCTG 432129 Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 |||||||| ||||| ||||||| |||||| | ||||| ||||| | | ||| Sbjct 432128 GCAGCATCGGCACCACCCTTGAGACGCGAACCGAAGTTACCACTGGGCTCAAGGTAGTTG 432069 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | |||||||| || |||||||| || || | ||||||||| || ||||| | || Sbjct 432068 ATGTTGTTGGTACCGACAAAGTTCTGCGCAAGGTTGACAATAGTTCCTTGCATAGAAGCT 432009 Query 117446 TCACCATGGTGATACGCCGTCTGCTCC-GCCACGTAGCCCGCCAGCTGAGCCACCTTCAT 117504 ||||| || ||| | || | ||| | ||| | || || |||| | | ||||| | Sbjct 432008 TCACCGTGAGCATAGTCGGTG-GATCCAGAGACGGAACCTGCAAGCTCAACGACCTTGAC 431950 Query 117505 GTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAG 117564 ||| | | | ||| | ||| |||| ||| | ||||| ||||||| |||||||| Sbjct 431949 ATCTTTCTTGATGTTTCGCCTGAAACAGGTATACAGAACCTTTCGCTGACCGGGCTTCAG 431890 Query 117565 ACCATCCGCCACGTGAGGG-ATCGAACGC 117592 |||||| | ||| ||||| ||||| ||| Sbjct 431889 ACCATCGACAACG-GAGGGAATCGATCGC 431862 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 119002 CTTGCTCATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTTACC------ATCACTAAT 119055 ||||||||||||||||||||||| |||| |||| ||||||| ||| | Sbjct 430338 CTTGCTCATGTTGTCGGTCCAAGTTTGCTTGTACTTCTTCTTCTGCTTCGAATCGACCGT 430279 Query 119056 TTTGATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACC 119115 | || |||||| | |||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 430278 CTCGACCGTAAATTCGGTACTGAAAACGTTACAAAGCTTTGCTCCGTAACCGTTACGACC 430219 Query 119116 ACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 |||||| || ||||| | ||||| |||||||||| || | |||||| |||||||| Sbjct 430218 ACCGGTGACCTTCTGCTGGTTGTCGTCGTAGTTGGAGGATGTGAGAAGGTGACCAAAGAT 430159 Query 119176 GAGCTCGGG 119184 | ||| || Sbjct 430158 CATCTCTGG 430150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215459624200