Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq16 250 3e-61
seq10 116 4e-21
>seq16
Length=840418
Score = 250 bits (276), Expect = 3e-61
Identities = 390/545 (72%), Gaps = 12/545 (2%)
Strand=Plus/Minus
Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302
||||| ||||||| ||| ||||||||||| || |||||| |||| || ||||||||
Sbjct 27449 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 27390
Query 53303 GCTGGTACGA-ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361
|| || || |||||| || |||||| |||||||| | | |||||||| |||
Sbjct 27389 GCGGGCACACCATCACCA-CAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAG 27331
Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421
||||||||||| ||||| || |||||| ||||| ||||||||| | || ||
Sbjct 27330 CATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 27271
Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480
||| || || || ||| | | | ||||| | ||| || ||| || || ||||
Sbjct 27270 TATTGGCCTCAACGTGCACCG-CATTCGTGCTACTGGCTCATACATCGGTGGCACTAACG 27212
Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540
| | |||| || | || |||||||| || | ||||||||| || || || |||
Sbjct 27211 GAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCG 27152
Query 53541 ACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599
|||||||||| ||||| | ||| | | |||||||||||||||||||| ||||||||
Sbjct 27151 ACCAGGGTGGCAACAAGCGTCCAGGTGCC-TTCGCCATCTACCTCGAGCCATGGCACGCT 27093
Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659
||| | | | || || || ||||| ||| || || | || ||| | ||| ||
Sbjct 27092 GACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGC 27033
Query 53660 GACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GAC 53716
|| || || ||| |||||||||||||| |||||||||||| || ||| ||| ||
Sbjct 27032 GATCTCTTCTAC-GCTCTGTGGATTCCTGACCTCTTCATG--AAGCGTGTTCAAGACAAC 26976
Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776
| | ||| ||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 26975 GGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAA 26916
Query 53777 GAGTT 53781
|| ||
Sbjct 26915 GAATT 26911
Score = 125 bits (138), Expect = 8e-24
Identities = 301/448 (67%), Gaps = 7/448 (2%)
Strand=Plus/Minus
Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541
|||||||||| |||||| | || || |||||||| || || || | ||||| ||||||
Sbjct 26230 TACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCA 26171
Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601
|||||||| |||||||| ||||| |||||||||| ||||| ||| || ||||
Sbjct 26170 ACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTG 26111
Query 55602 AGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC 55661
|||| | ||||| | |||||||||| | || ||||
Sbjct 26110 AGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTG 26051
Query 55662 CGCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGT--CCAGAAT-CTGGAGATT 55717
| | || |||| ||| | || || || || || | |||| || | | ||
Sbjct 26050 AGAACATGAAGAACCGTATCATCGCCGAT-GGAGGTTCGATTGCCAGGATTCCCAACATC 25992
Query 55718 CCTCTGCGTCTCAAGGAGA-TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776
||| | | ||| || ||||| ||| || |||||||| | ||| || | ||
Sbjct 25991 CCTGAG-GAGACAAAGACCCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCAT 25933
Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836
||| ||| ||||| |||||||| | ||| |||||||| ||||| || |||||| |||
Sbjct 25932 TGAGATGGCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACAT 25873
Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896
| || | ||| | ||| |||| | | || ||||||||| || |||||| || ||
Sbjct 25872 GAAGGAGCCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCT 25813
Query 55897 CAAGACGGGTATGTACTATCTGCGGACC 55924
|||||| || ||||||||||| || |||
Sbjct 25812 CAAGACTGGCATGTACTATCTCCGTACC 25785
>seq10
Length=1117896
Score = 116 bits (128), Expect = 4e-21
Identities = 304/449 (68%), Gaps = 16/449 (4%)
Strand=Plus/Minus
Query 117152 CCAGTTCCGATACC-CTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAA 117210
||||| || ||||| ||| | ||| || || |||||| | |||| | || || | |
Sbjct 432302 CCAGTACCAATACCGCTC-GAACCGTTGATGAGAATCGTGGGCAGAATCGGGACAAACAT 432244
Query 117211 CTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTG-TCACTCG 117269
||| ||||| | || ||||||| | | ||||||| |||| |||| ||| |||
Sbjct 432243 CTCGGGCTCGATCTTGTGACCGTCCGACTCGCCGTACTTCAGCA----ATTGGTCA-TCG 432189
Query 117270 -GATCGAATATG-TTCTTGGTCC--ACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTT 117325
| || | | ||| | || | | || | ||||| ||| |||| || | | |||
Sbjct 432188 TGGGCGTGGAAGATTCGTCGTGCGAATGGCGAAAGGCGTGTGTAAATATACCTGGCGCTG 432129
Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385
|||||||| ||||| ||||||| |||||| | ||||| ||||| | | |||
Sbjct 432128 GCAGCATCGGCACCACCCTTGAGACGCGAACCGAAGTTACCACTGGGCTCAAGGTAGTTG 432069
Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445
| |||||||| || |||||||| || || | ||||||||| || ||||| | ||
Sbjct 432068 ATGTTGTTGGTACCGACAAAGTTCTGCGCAAGGTTGACAATAGTTCCTTGCATAGAAGCT 432009
Query 117446 TCACCATGGTGATACGCCGTCTGCTCC-GCCACGTAGCCCGCCAGCTGAGCCACCTTCAT 117504
||||| || ||| | || | ||| | ||| | || || |||| | | ||||| |
Sbjct 432008 TCACCGTGAGCATAGTCGGTG-GATCCAGAGACGGAACCTGCAAGCTCAACGACCTTGAC 431950
Query 117505 GTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAG 117564
||| | | | ||| | ||| |||| ||| | ||||| ||||||| ||||||||
Sbjct 431949 ATCTTTCTTGATGTTTCGCCTGAAACAGGTATACAGAACCTTTCGCTGACCGGGCTTCAG 431890
Query 117565 ACCATCCGCCACGTGAGGG-ATCGAACGC 117592
|||||| | ||| ||||| ||||| |||
Sbjct 431889 ACCATCGACAACG-GAGGGAATCGATCGC 431862
Score = 107 bits (118), Expect = 2e-18
Identities = 137/189 (72%), Gaps = 6/189 (3%)
Strand=Plus/Minus
Query 119002 CTTGCTCATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTTACC------ATCACTAAT 119055
||||||||||||||||||||||| |||| |||| ||||||| ||| |
Sbjct 430338 CTTGCTCATGTTGTCGGTCCAAGTTTGCTTGTACTTCTTCTTCTGCTTCGAATCGACCGT 430279
Query 119056 TTTGATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACC 119115
| || |||||| | |||||| ||||| ||||| || ||||| ||||| |||||
Sbjct 430278 CTCGACCGTAAATTCGGTACTGAAAACGTTACAAAGCTTTGCTCCGTAACCGTTACGACC 430219
Query 119116 ACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175
|||||| || ||||| | ||||| |||||||||| || | |||||| ||||||||
Sbjct 430218 ACCGGTGACCTTCTGCTGGTTGTCGTCGTAGTTGGAGGATGTGAGAAGGTGACCAAAGAT 430159
Query 119176 GAGCTCGGG 119184
| ||| ||
Sbjct 430158 CATCTCTGG 430150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215459624200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |