Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq16 242 4e-59 seq10 168 8e-37 seq14 107 2e-18 seq13 107 2e-18 >seq16 Length=840418 Score = 242 bits (268), Expect = 4e-59 Identities = 649/976 (66%), Gaps = 47/976 (5%) Strand=Plus/Plus Query 80809 TCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAG 80868 ||||||| ||||| |||||| || || ||| |||| || || || || |||| ||| Sbjct 26563 TCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAG 26622 Query 80869 TCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCAC 80922 || || | |||| ||||| | || ||| || || |||| ||||| Sbjct 26623 TCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAA 26682 Query 80923 ACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA 80982 || || ||||| |||| | | || |||| || || || ||||||| || || Sbjct 26683 ACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGG 26742 Query 80983 ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTAC 81042 || ||||| ||||| |||||||| |||| ||||||||||||||||||| ||| | Sbjct 26743 ATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAG 26802 Query 81043 GGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC--GCGCGCCTTGA 81100 ||| |||| |||||| ||||| || |||||||||| ||||| || | |||| || Sbjct 26803 GGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGC---GA 26859 Query 81101 CCAC-CTTGCGGAATTTGCCTTCGGC--CACATACTTGGCGTA---AGCTTCGTCGAACT 81154 || || ||| ||| ||| || | | || | |||| ||||||| || | Sbjct 26860 ACAGTCTCGCGACCCTTG--TTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCG---AATT 26914 Query 81155 TGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGG 81214 |||||| | || | |||| | ||||||||||| ||||||||||| ||||| Sbjct 26915 CTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGT--- 26971 Query 81215 TGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGT 81271 || |||| ||| ||| ||||||||| |||||| ||||| || ||| ||| || | Sbjct 26972 TGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGAT 27031 Query 81272 CGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGAT 81329 |||| |||||| ||||||| | || ||||| ||||| || || ||| | | || Sbjct 27032 CGCG--AGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGAC 27089 Query 81330 GTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------GCCACC 81383 ||| || ||||||||||| || || | ||||| | | ||| |||| |||||| Sbjct 27090 GTCAGCGTGCCATGGCTCGAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACC 27146 Query 81384 CTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGA 81443 ||||| ||| || || ||||| ||| ||||||| | ||| || |||| ||||| || Sbjct 27147 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGA 27206 Query 81444 CTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGA 81501 ||||| || || |||| || || | || || | | ||| ||| || Sbjct 27207 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AGG 27264 Query 81502 CCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCC 81561 || || || || | ||| || ||| ||||| || | || || ||||| || Sbjct 27265 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 27324 Query 81562 TCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG 81621 |||||||| || | |||||||| | | ||| || ||||| || || | || | Sbjct 27325 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTG 27384 Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681 || || ||||||| || || | ||||| |||| || | ||||| ||| ||| Sbjct 27385 CCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAG 27444 Query 81682 GTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATG 81741 || || || | || || || |||||||| || | ||| |||||||| | |||| Sbjct 27445 GTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATG 27504 Query 81742 TACTG-GGGCGTCTCG 81756 | || ||||| |||| Sbjct 27505 TGTTGTGGGCG-CTCG 27519 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || |||||||||||||| |||||||| || ||||||||| | |||||||||| Sbjct 25786 GTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAA 25845 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | || |||| |||||| || ||||||||||| ||| Sbjct 25846 GTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATG 25905 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAAT 80189 ||||| ||||| || || ||||| ||||| || Sbjct 25906 AAAGCACCACGGTCAGCGGCCATCTCAATGAT 25937 >seq10 Length=1117896 Score = 168 bits (186), Expect = 8e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| |||||||| ||||| ||||| | || || ||||| | Sbjct 915292 ATGCAGATCTTCGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCCAGC 915351 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || |||||||||||||| |||||||| |||||| Sbjct 915352 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAG 915411 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| || || || | || || || ||||||| || Sbjct 915412 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 915471 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| || ||||| || | || | |||||||| || |||||| Sbjct 915472 ATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGCGGACAA 915522 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || || ||||| || ||| | Sbjct 915064 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 915123 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || ||||||||||||||||| |||||||| ||||| Sbjct 915124 GACACTATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 915183 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | || || | ||||| || ||||||| || Sbjct 915184 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCAGACTACAAC 915243 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || |||||| | || | ||||| || ||||| Sbjct 915244 ATCCAAAAGGAGTCTACACTTCATTTGGTGCTTCGTCTCCGTGGTGG 915290 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||| ||||| || || || ||||||||||| || | || | ||| | ||| Sbjct 914579 ACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTCAAGAGC 914638 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| |||||||||||||| | || || || || ||| Sbjct 914639 AAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 914698 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| ||| ||| | | ||||| || |||| |||||||| || || ||| Sbjct 914699 CAGCTTGAGGATGGTCGCACCTTGTCCGACTACAACATCCAGAAGGAATCTACCCTGCAT 914758 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| || || Sbjct 914759 CTCGTCCTCCGCCTTCGTGGAGG 914781 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || |||||||||||||||||| || | ||| | || | ||| | Sbjct 914860 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 914919 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||| || ||||| || ||||| || || || || || || ||| Sbjct 914920 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 914979 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||||||||| | || ||||| | ||||| || | || ||||| ||||| | || Sbjct 914980 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACATTGCAC 915039 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 915040 CTTGTCCTCCGCCTGCGTGGTGG 915062 >seq14 Length=985265 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 862859 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 862918 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || | ||||| || |||| ||||| ||||| || || | ||| | Sbjct 862919 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTCCTC 862978 Query 27619 CGTCTTCGCGGTGG 27632 || ||||| ||||| Sbjct 862979 CGCCTTCGTGGTGG 862992 >seq13 Length=1001457 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || || |||||||||||||| ||||| || ||||| ||||| || || || || Sbjct 407338 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCC 407279 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || |||||||||||||||| || || || | ||||| || |||| ||||| || || Sbjct 407278 GGAAAGCAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACC 407219 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||| | ||||| || ||||| Sbjct 407218 CTCCACTTGGTCCTCCGTCTCCGTGGTGG 407190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309836818480