Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 4e-13 >seq4 Length=1543048 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/237 (69%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 30223 CATGTCCGT-GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 ||||||| | |||||| || || ||||||| ||||||||| ||||| || || ||||| | Sbjct 1297558 CATGTCCCTTGTACTCGGCGCCAAAATGCCGCCACTGGAAGCCGTATACTGGACCCAGCT 1297499 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 | || || || ||| | | |||| |||||| | | || | |||||| ||| Sbjct 1297498 CGCCTTCCTCGTAGTGGTTTAGGCCCACCTTGTCGAGGTACTCCCGACTGCCGTTGCCGT 1297439 Query 30342 CCCAGATCTT--TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30399 |||||||||| |||| | || |||||| ||| || |||| ||| ||| || Sbjct 1297438 CCCAGATCTTGATACCAGCGTCCGAGAGAGAC--TTGCTGTGTGTGCTGCCTGCGACAAA 1297381 Query 30400 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 ||| |||| ||| | | ||||| ||| || || || || ||||||||||| Sbjct 1297380 CCATAGCAACTCGCCAATTACGGCACGAGTAAATACTCTTTTTGTTGTGAGGAGGGG 1297324 Score = 86.0 bits (94), Expect = 5e-12 Identities = 202/303 (67%), Gaps = 3/303 (1%) Strand=Plus/Minus Query 29737 CATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTT 29796 |||| |||| ||| |||| ||| || | ||| ||| | ||| ||||| || || Sbjct 1298079 CATCTTCATGGATATAGCGGCATGTGGTTTGTACCCCAGGACCTCGAATTCCTCGGCTTT 1298020 Query 29797 AAAGTCGTCCAGGCT--CTCCACCCTC-CTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29853 | | || | ||| | ||| ||| | ||| ||| | ||||| || || || || Sbjct 1298019 CCAACCATCGATGCTGCCCCCAATCTCTCGGTTGATCTTGAGTGTAGGGAACTCTCGCGG 1297960 Query 29854 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCC 29913 || | ||| ||||| |||||||| || | || || | ||| ||||| ||||| || Sbjct 1297959 TTCGCGCTCCAGCTGCACCTTCAGCGCATCTATGTGGTCGATGTATACGTGTGCGTCGCC 1297900 Query 29914 CAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 29973 || | || ||| || || ||| || || ||||| | ||||| ||||| Sbjct 1297899 CATTGTATGTGTAAATGTACCGGGCGTTAGGTCGCACACATGAGCTAGCATGTGAGTGAG 1297840 Query 29974 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033 || | |||| ||||||||| || ||||| ||||| ||||| || | || |||||||| Sbjct 1297839 AAGCGCGTAGGAGGCGATGTTGAAAGGTACACCGAGACCCATATCGCAGGATCTCTGGTA 1297780 Query 30034 GAG 30036 ||| Sbjct 1297779 GAG 1297777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310008799268