Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq4 89.7 4e-13
>seq4
Length=1543048
Score = 89.7 bits (98), Expect = 4e-13
Identities = 164/237 (69%), Gaps = 5/237 (2%)
Strand=Plus/Minus
Query 30223 CATGTCCGT-GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281
||||||| | |||||| || || ||||||| ||||||||| ||||| || || ||||| |
Sbjct 1297558 CATGTCCCTTGTACTCGGCGCCAAAATGCCGCCACTGGAAGCCGTATACTGGACCCAGCT 1297499
Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341
| || || || ||| | | |||| |||||| | | || | |||||| |||
Sbjct 1297498 CGCCTTCCTCGTAGTGGTTTAGGCCCACCTTGTCGAGGTACTCCCGACTGCCGTTGCCGT 1297439
Query 30342 CCCAGATCTT--TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30399
|||||||||| |||| | || |||||| ||| || |||| ||| ||| ||
Sbjct 1297438 CCCAGATCTTGATACCAGCGTCCGAGAGAGAC--TTGCTGTGTGTGCTGCCTGCGACAAA 1297381
Query 30400 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456
||| |||| ||| | | ||||| ||| || || || || |||||||||||
Sbjct 1297380 CCATAGCAACTCGCCAATTACGGCACGAGTAAATACTCTTTTTGTTGTGAGGAGGGG 1297324
Score = 86.0 bits (94), Expect = 5e-12
Identities = 202/303 (67%), Gaps = 3/303 (1%)
Strand=Plus/Minus
Query 29737 CATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTT 29796
|||| |||| ||| |||| ||| || | ||| ||| | ||| ||||| || ||
Sbjct 1298079 CATCTTCATGGATATAGCGGCATGTGGTTTGTACCCCAGGACCTCGAATTCCTCGGCTTT 1298020
Query 29797 AAAGTCGTCCAGGCT--CTCCACCCTC-CTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29853
| | || | ||| | ||| ||| | ||| ||| | ||||| || || || ||
Sbjct 1298019 CCAACCATCGATGCTGCCCCCAATCTCTCGGTTGATCTTGAGTGTAGGGAACTCTCGCGG 1297960
Query 29854 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCC 29913
|| | ||| ||||| |||||||| || | || || | ||| ||||| ||||| ||
Sbjct 1297959 TTCGCGCTCCAGCTGCACCTTCAGCGCATCTATGTGGTCGATGTATACGTGTGCGTCGCC 1297900
Query 29914 CAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 29973
|| | || ||| || || ||| || || ||||| | ||||| |||||
Sbjct 1297899 CATTGTATGTGTAAATGTACCGGGCGTTAGGTCGCACACATGAGCTAGCATGTGAGTGAG 1297840
Query 29974 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033
|| | |||| ||||||||| || ||||| ||||| ||||| || | || ||||||||
Sbjct 1297839 AAGCGCGTAGGAGGCGATGTTGAAAGGTACACCGAGACCCATATCGCAGGATCTCTGGTA 1297780
Query 30034 GAG 30036
|||
Sbjct 1297779 GAG 1297777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406310008799268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |