Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 4e-13 >seq10 Length=1117896 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| ||||| || || || || | || || || |||| || Sbjct 915273 CACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTC 915214 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || || || || || |||||||| ||||| | || | | ||| |||||| Sbjct 915213 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG 915154 Query 39195 GATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| |||| ||| | || || ||||| || ||||| || | |||||| | | Sbjct 915153 AATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCT 915095 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || ||||||||||| Sbjct 915094 TGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||| || || || || || || | || ||||| |||| || Sbjct 915501 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 915442 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| | || | | ||| |||||| Sbjct 915441 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 915382 Query 39195 GATTTT---CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| || || || | |||| | ||| ||||| ||||| || |||| || || | Sbjct 915381 GATCTTGGACT-TTACATTGTCG--ATCGTGTCGCTGGACTCGACTTCCAATGTAATGGT 915325 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || || || ||||| ||||| Sbjct 915324 CTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545186428127