Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 1e-12 >seq4 Length=1543048 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29596 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTC 29655 ||| ||| | ||||| || || || || || | ||| ||||| | | |||||| || Sbjct 1297989 GTTGATCTTGAGTGTAGGGAACTCTCGCGGTTCGCGCTCCAGCTGCACCTTCAGCGCATC 1297930 Query 29656 CACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29715 | |||||| | ||| ||||| || || |||| || || ||| || || ||| Sbjct 1297929 TATGTGGTCGATGTATACGTGTGCGTCGCCCATTGTATGTGTAAATGTACCGGGCGTTAG 1297870 Query 29716 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCAC 29775 || || ||||| | ||||| ||||| || | |||| ||||||||| || || || Sbjct 1297869 GTCGCACACATGAGCTAGCATGTGAGTGAGAAGCGCGTAGGAGGCGATGTTGAAAGGTAC 1297810 Query 29776 CCCGAGCCCCATGTCCCCTGACCTCTGGTAGAG 29808 ||||| ||||| || | || ||||||||||| Sbjct 1297809 ACCGAGACCCATATCGCAGGATCTCTGGTAGAG 1297777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162808940994