Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 9e-15 >seq4 Length=1543048 Score = 95.1 bits (104), Expect = 9e-15 Identities = 204/303 (67%), Gaps = 3/303 (1%) Strand=Plus/Minus Query 27003 CATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTT 27062 |||| |||| ||| |||| ||| || | ||| ||| | ||| ||||| || || Sbjct 1298079 CATCTTCATGGATATAGCGGCATGTGGTTTGTACCCCAGGACCTCGAATTCCTCGGCTTT 1298020 Query 27063 AAAGTCGTCCAGGCT--CTCCACCCTC-CTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 27119 | | || | ||| | ||| ||| | ||| ||| | ||||| || || || || Sbjct 1298019 CCAACCATCGATGCTGCCCCCAATCTCTCGGTTGATCTTGAGTGTAGGGAACTCTCGCGG 1297960 Query 27120 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCC 27179 || | ||| ||||| |||||||| || | ||| || | ||| ||||| ||||| || Sbjct 1297959 TTCGCGCTCCAGCTGCACCTTCAGCGCATCTATGTGGTCGATGTATACGTGTGCGTCGCC 1297900 Query 27180 CAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 27239 || || || ||| || || ||| || || ||||| | ||||| ||||| Sbjct 1297899 CATTGTATGTGTAAATGTACCGGGCGTTAGGTCGCACACATGAGCTAGCATGTGAGTGAG 1297840 Query 27240 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 27299 || | |||| ||||||||| || ||||| ||||| ||||| || | || |||||||| Sbjct 1297839 AAGCGCGTAGGAGGCGATGTTGAAAGGTACACCGAGACCCATATCGCAGGATCTCTGGTA 1297780 Query 27300 GAG 27302 ||| Sbjct 1297779 GAG 1297777 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/235 (68%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 27489 CATGTCCGT-GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 ||||||| | |||||| || || ||||||| ||| ||||| ||||| || || ||||| | Sbjct 1297558 CATGTCCCTTGTACTCGGCGCCAAAATGCCGCCACTGGAAGCCGTATACTGGACCCAGCT 1297499 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 | || || || ||| | | |||| |||||| | | || | |||||| ||| Sbjct 1297498 CGCCTTCCTCGTAGTGGTTTAGGCCCACCTTGTCGAGGTACTCCCGACTGCCGTTGCCGT 1297439 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 |||||||||| | || || ||||| ||| || |||| ||| ||| |||| Sbjct 1297438 CCCAGATCTTGATACCAGCGTCCGAGAGAGACTTGCTGTGTGTGCTGCCTGCGACAAACC 1297379 Query 27668 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 | |||| ||| | | ||||| ||| || || || || ||||||||||| Sbjct 1297378 ATAGCAACTCGCCAATTACGGCACGAGTAAATACTCTTTTTGTTGTGAGGAGGGG 1297324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506844233849