Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq4 95.1 9e-15
>seq4
Length=1543048
Score = 95.1 bits (104), Expect = 9e-15
Identities = 204/303 (67%), Gaps = 3/303 (1%)
Strand=Plus/Minus
Query 27003 CATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTT 27062
|||| |||| ||| |||| ||| || | ||| ||| | ||| ||||| || ||
Sbjct 1298079 CATCTTCATGGATATAGCGGCATGTGGTTTGTACCCCAGGACCTCGAATTCCTCGGCTTT 1298020
Query 27063 AAAGTCGTCCAGGCT--CTCCACCCTC-CTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 27119
| | || | ||| | ||| ||| | ||| ||| | ||||| || || || ||
Sbjct 1298019 CCAACCATCGATGCTGCCCCCAATCTCTCGGTTGATCTTGAGTGTAGGGAACTCTCGCGG 1297960
Query 27120 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCC 27179
|| | ||| ||||| |||||||| || | ||| || | ||| ||||| ||||| ||
Sbjct 1297959 TTCGCGCTCCAGCTGCACCTTCAGCGCATCTATGTGGTCGATGTATACGTGTGCGTCGCC 1297900
Query 27180 CAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 27239
|| || || ||| || || ||| || || ||||| | ||||| |||||
Sbjct 1297899 CATTGTATGTGTAAATGTACCGGGCGTTAGGTCGCACACATGAGCTAGCATGTGAGTGAG 1297840
Query 27240 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 27299
|| | |||| ||||||||| || ||||| ||||| ||||| || | || ||||||||
Sbjct 1297839 AAGCGCGTAGGAGGCGATGTTGAAAGGTACACCGAGACCCATATCGCAGGATCTCTGGTA 1297780
Query 27300 GAG 27302
|||
Sbjct 1297779 GAG 1297777
Score = 82.4 bits (90), Expect = 6e-11
Identities = 160/235 (68%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 27489 CATGTCCGT-GTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547
||||||| | |||||| || || ||||||| ||| ||||| ||||| || || ||||| |
Sbjct 1297558 CATGTCCCTTGTACTCGGCGCCAAAATGCCGCCACTGGAAGCCGTATACTGGACCCAGCT 1297499
Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607
| || || || ||| | | |||| |||||| | | || | |||||| |||
Sbjct 1297498 CGCCTTCCTCGTAGTGGTTTAGGCCCACCTTGTCGAGGTACTCCCGACTGCCGTTGCCGT 1297439
Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667
|||||||||| | || || ||||| ||| || |||| ||| ||| ||||
Sbjct 1297438 CCCAGATCTTGATACCAGCGTCCGAGAGAGACTTGCTGTGTGTGCTGCCTGCGACAAACC 1297379
Query 27668 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722
| |||| ||| | | ||||| ||| || || || || |||||||||||
Sbjct 1297378 ATAGCAACTCGCCAATTACGGCACGAGTAAATACTCTTTTTGTTGTGAGGAGGGG 1297324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369506844233849
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |