Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq10 100 7e-16
>seq10
Length=1117896
Score = 100 bits (110), Expect = 7e-16
Identities = 150/210 (71%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||||||||| || ||||||||||| || | | |||| || ||||| |
Sbjct 915498 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCA 915440
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || |||||||| || | ||||||||||| | || || ||||| || || |
Sbjct 915439 GCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGA 915380
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
| || || ||| | || | ||| ||| | ||| ||||| | ||||| || ||
Sbjct 915379 TCTTGGACTTTACATTGTCGATCGTGTCGCTGGA--CTCGACTTCCAATGTAATGGTCTT 915322
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || |||||||| ||||||| ||||||
Sbjct 915321 TCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Score = 96.9 bits (106), Expect = 8e-15
Identities = 137/191 (72%), Gaps = 4/191 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| || | || ||||| || || |||||||| |||| | || | || ||
Sbjct 915048 GAGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTC 914989
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
|| || ||||| |||||||||||||| | ||||| |||| | ||| || |||||
Sbjct 914988 CTCGAGTTGCTTT--CCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTG 914931
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
||||| || ||| ||||| | || | | |||| || ||| || |||||||| ||
Sbjct 914930 TCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATG 914871
Query 152070 GTTTTGCCCGT 152080
|| ||||| ||
Sbjct 914870 GTCTTGCCGGT 914860
Score = 95.1 bits (104), Expect = 3e-14
Identities = 153/217 (71%), Gaps = 10/217 (5%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | |||||| |||||||| |||||||||||||| || | | ||| | || |||
Sbjct 915275 AGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCT 915216
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| | ||||| ||||||||||| || | ||| ||||||| | || || ||||| |
Sbjct 915215 TCCAACTGCTTT--CCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGT 915158
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAA 152067
| ||||| || ||||| | || | |||| ||| || || || || || |
Sbjct 915157 CCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGA---TTCCACCTCGAGCGTGA 915101
Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || ||||| || || ||||| ||||||| |||||
Sbjct 915100 TGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| ||||| || ||||| || || ||||||||||| |||| || || | |||||
Sbjct 914767 GAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATC 914708
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| | | ||||||||| | | || || ||||| ||
Sbjct 914707 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 914648
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || |||||| | || | |||| || ||| || || || || || ||
Sbjct 914647 CTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGT 914588
Query 152072 TTTGCCCGTGA 152082
|| || ||||
Sbjct 914587 CTTTCCGGTGA 914577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153819632117009
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |