Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq10 100 7e-16 >seq10 Length=1117896 Score = 100 bits (110), Expect = 7e-16 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||||||||| || ||||||||||| || | | |||| || ||||| | Sbjct 915498 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCA 915440 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||||| | || || ||||| || || | Sbjct 915439 GCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGA 915380 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 | || || ||| | || | ||| ||| | ||| ||||| | ||||| || || Sbjct 915379 TCTTGGACTTTACATTGTCGATCGTGTCGCTGGA--CTCGACTTCCAATGTAATGGTCTT 915322 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| ||||||| |||||| Sbjct 915321 TCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || | || ||||| || || |||||||| |||| | || | || || Sbjct 915048 GAGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTC 914989 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| |||||||||||||| | ||||| |||| | ||| || ||||| Sbjct 914988 CTCGAGTTGCTTT--CCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTG 914931 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || ||| ||||| | || | | |||| || ||| || |||||||| || Sbjct 914930 TCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATG 914871 Query 152070 GTTTTGCCCGT 152080 || ||||| || Sbjct 914870 GTCTTGCCGGT 914860 Score = 95.1 bits (104), Expect = 3e-14 Identities = 153/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| |||||||| |||||||||||||| || | | ||| | || ||| Sbjct 915275 AGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCT 915216 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| ||||||||||| || | ||| ||||||| | || || ||||| | Sbjct 915215 TCCAACTGCTTT--CCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGT 915158 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAA 152067 | ||||| || ||||| | || | |||| ||| || || || || || | Sbjct 915157 CCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGA---TTCCACCTCGAGCGTGA 915101 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || ||||| ||||||| ||||| Sbjct 915100 TGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || ||||| || || ||||||||||| |||| || || | ||||| Sbjct 914767 GAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGACCATC 914708 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | ||||||||| | | || || ||||| || Sbjct 914707 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 914648 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | |||| || ||| || || || || || || Sbjct 914647 CTGGATCTTGCTCTTGACATTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGT 914588 Query 152072 TTTGCCCGTGA 152082 || || |||| Sbjct 914587 CTTTCCGGTGA 914577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819632117009