Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq10 156 9e-33 seq5 132 1e-25 seq13 116 8e-21 seq14 114 3e-20 >seq10 Length=1117896 Score = 156 bits (172), Expect = 9e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || || ||| || || || ||||||||||| | Sbjct 915063 ACCACCACGCAGGCGGAGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGA 915004 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| ||||| || ||||| ||||| | ||||| || || || Sbjct 915003 CAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGG 914944 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||||||||||| || ||| | ||||| ||||| || | || || Sbjct 914943 GATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAAC 914884 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || |||||||| ||||| || |||| Sbjct 914883 CTCAAGAGTGATGGTCTTGCCGGTCA 914858 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| ||| | || || ||||||||||||||||| | Sbjct 915291 ACCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGA 915232 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| || || | || || ||||| ||||| | ||| |||||||| || Sbjct 915231 GAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGG 915172 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || ||| | || |||||||| | ||| || Sbjct 915171 AATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCAC 915112 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || |||| ||||| ||||| || ||||| Sbjct 915111 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 145 bits (160), Expect = 2e-29 Identities = 159/206 (77%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 ||| ||||| ||||| || || ||||| | || ||| || |||||||||||||| | Sbjct 914782 ACCTCCACGAAGGCGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGA 914723 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| ||||| |||||||| || || || ||||| |||||||| || || ||||| | Sbjct 914722 CAAG-GTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGG 914664 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCG 283049 |||| ||||||||||| |||||||| ||| || || | ||||||||||| || | || Sbjct 914663 GAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATAGTGTCGGAGGACTCA 914605 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGT 283075 || ||||| ||||| ||||| || || Sbjct 914604 ACCTCGAGGGTGATGGTCTTTCCGGT 914579 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| || | || || || |||||||||||||| | Sbjct 915518 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 915459 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| || || || || || || || ||||| | ||| || ||||| ||| Sbjct 915458 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 915399 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | ||||| | ||||| ||||| | |||||| Sbjct 915398 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACT 915339 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || || | |||||| ||||| |||||||| Sbjct 915338 TCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292 >seq5 Length=1540376 Score = 132 bits (146), Expect = 1e-25 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| |||| || | | ||| |||||||| | ||||||| | || ||| | Sbjct 775641 ATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCT 775582 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || |||||||||| ||| ||||||| | ||||| ||||| ||||| ||||| ||| | Sbjct 775581 CTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACCGTCTG 775522 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | |||| || || ||| || || || || ||| |||||||||| || |||||| Sbjct 775521 CTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAG 775462 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 |||||| || || || || ||||||||||| ||||| ||| |||| || || | | Sbjct 775461 AACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAG 775402 Query 230403 CCCGGTGT 230410 | ||||| Sbjct 775401 GCTGGTGT 775394 >seq13 Length=1001457 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || || || |||||||||||||| | Sbjct 407189 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGA 407248 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| ||||| || ||||| ||||||| || |||||||| || Sbjct 407249 CAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGG 407308 Query 282992 AATACCCTCCTTGTCTTGGATCTT 283015 ||| ||||||||||| |||||||| Sbjct 407309 AATGCCCTCCTTGTCCTGGATCTT 407332 >seq14 Length=985265 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| || || |||||||||||||| | Sbjct 862993 ACCACCACGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 862934 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || ||||| ||||||| ||| || ||||| || Sbjct 862933 AAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 862874 Query 282992 AATACCCTCCTTGTCT 283007 ||| |||||||||||| Sbjct 862873 AATGCCCTCCTTGTCT 862858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738140503666