Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq10 156 9e-33
seq5 132 1e-25
seq13 116 8e-21
seq14 114 3e-20
>seq10
Length=1117896
Score = 156 bits (172), Expect = 9e-33
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || || || || || ||| || || || ||||||||||| |
Sbjct 915063 ACCACCACGCAGGCGGAGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGA 915004
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| ||||| || ||||| ||||| | ||||| || || ||
Sbjct 915003 CAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGG 914944
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||||||||||||||||| || ||| | ||||| ||||| || | || ||
Sbjct 914943 GATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAAC 914884
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
|| |||||||| ||||| || ||||
Sbjct 914883 CTCAAGAGTGATGGTCTTGCCGGTCA 914858
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| ||| | || || ||||||||||||||||| |
Sbjct 915291 ACCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGA 915232
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| || || | || || ||||| ||||| | ||| |||||||| ||
Sbjct 915231 GAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGG 915172
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| || ||||| | || ||| | || |||||||| | ||| ||
Sbjct 915171 AATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCAC 915112
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || |||| ||||| ||||| || |||||
Sbjct 915111 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 145 bits (160), Expect = 2e-29
Identities = 159/206 (77%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||| ||||| ||||| || || ||||| | || ||| || |||||||||||||| |
Sbjct 914782 ACCTCCACGAAGGCGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGA 914723
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| ||||| |||||||| || || || ||||| |||||||| || || ||||| |
Sbjct 914722 CAAG-GTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGG 914664
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCG 283049
|||| ||||||||||| |||||||| ||| || || | ||||||||||| || | ||
Sbjct 914663 GAATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATAGTGTCGGAGGACTCA 914605
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGT 283075
|| ||||| ||||| ||||| || ||
Sbjct 914604 ACCTCGAGGGTGATGGTCTTTCCGGT 914579
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || || |||| || | || || || |||||||||||||| |
Sbjct 915518 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 915459
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| ||||| || || || || || || || ||||| | ||| || ||||| |||
Sbjct 915458 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 915399
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|||||||||||||| |||||||| | ||||| | ||||| ||||| | ||||||
Sbjct 915398 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTGGACTCGACT 915339
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | || || ||||| || || | |||||| ||||| ||||||||
Sbjct 915338 TCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
>seq5
Length=1540376
Score = 132 bits (146), Expect = 1e-25
Identities = 178/248 (72%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222
||| |||| |||| || | | ||| |||||||| | ||||||| | || ||| |
Sbjct 775641 ATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCT 775582
Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282
|| |||||||||| ||| ||||||| | ||||| ||||| ||||| ||||| ||| |
Sbjct 775581 CTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACCGTCTG 775522
Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342
| |||| || || ||| || || || || ||| |||||||||| || ||||||
Sbjct 775521 CTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAG 775462
Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402
|||||| || || || || ||||||||||| ||||| ||| |||| || || | |
Sbjct 775461 AACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAG 775402
Query 230403 CCCGGTGT 230410
| |||||
Sbjct 775401 GCTGGTGT 775394
>seq13
Length=1001457
Score = 116 bits (128), Expect = 8e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || |||| || | || || || |||||||||||||| |
Sbjct 407189 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGA 407248
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| ||||| || ||||| ||||||| || |||||||| ||
Sbjct 407249 CAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGG 407308
Query 282992 AATACCCTCCTTGTCTTGGATCTT 283015
||| ||||||||||| ||||||||
Sbjct 407309 AATGCCCTCCTTGTCCTGGATCTT 407332
>seq14
Length=985265
Score = 114 bits (126), Expect = 3e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | ||| || || |||||||||||||| |
Sbjct 862993 ACCACCACGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 862934
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||||||||| || || || ||||| ||||||| ||| || ||||| ||
Sbjct 862933 AAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 862874
Query 282992 AATACCCTCCTTGTCT 283007
||| ||||||||||||
Sbjct 862873 AATGCCCTCCTTGTCT 862858
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738140503666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |