Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11]
79 sequences; 32,990,834 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq10 140 2e-28
>seq10
Length=1117896
Score = 140 bits (154), Expect = 2e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||||| || |||||||||||||||||| || | ||| || |||| ||
Sbjct 915273 CACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTC 915214
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| ||||| ||||| | |||||| || || | ||| | ||| ||||| |||
Sbjct 915213 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTG 915154
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| | | | || |||||| ||||||||||| | ||| || |||||
Sbjct 915153 AATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTT 915094
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||||||| ||||||||||||||
Sbjct 915093 GCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064
Score = 129 bits (142), Expect = 4e-25
Identities = 157/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || || |||||| ||||||||||| || | ||| || |||| ||
Sbjct 915501 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 915442
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| || || ||||| | ||||||||| || | ||| | ||| ||||| |||
Sbjct 915441 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 915382
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | || |||||| ||| || || |||| ||||| |||
Sbjct 915381 GATCTTGGACTTTACATTGT--CGATCGTGTCGCTGGACTCGACTTCCAATGTAATGGTC 915324
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || || ||||| |||||||| |||||
Sbjct 915323 TTTCCGGTAAGAGTCTTGACGAAGATCTGCAT 915292
Score = 100 bits (110), Expect = 2e-16
Identities = 128/172 (74%), Gaps = 6/172 (3%)
Strand=Plus/Minus
Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||||| ||||||||||| |||| | || | ||| | || || |||||||| ||||| ||
Sbjct 914745 TCCTTCTGGATGTTGTAGTCGGACAAGGT-GCGACCATCCTCAAGCTGCTTGCCGGCGAA 914687
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263
|||||| |||||||| |||| || | || ||||| ||| ||||| ||| || |
Sbjct 914686 GATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATT 914627
Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315
|| | || ||||||| ||| || ||||| | || || |||||||| ||||
Sbjct 914626 GT--CGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTTCCGGTGA 914577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990053396743
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |