Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10 149 2e-30 seq13 104 6e-17 seq14 91.5 4e-13 >seq10 Length=1117896 Score = 149 bits (164), Expect = 2e-30 Identities = 156/204 (76%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 ||||| ||||| || || || || || || || ||||| ||||||||||| |||| Sbjct 915067 CAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC--- 915123 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || || |||||||| |||||||||||||| || || || ||||||||||| Sbjct 915124 GACACTATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 915183 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||||||||| ||| | ||||| || | ||||| | || || ||| Sbjct 915184 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCAGACTACAAC 915243 Query 178101 GTCCAAAAAGAATCAACACTGCAT 178124 ||||||| || || ||||| ||| Sbjct 915244 ATCCAAAAGGAGTCTACACTTCAT 915267 Score = 140 bits (154), Expect = 8e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| || ||||| || || ||||||||||| |||||||| | Sbjct 914860 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 914919 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| || || ||||||||||| |||||||| ||||||||||||||||| Sbjct 914920 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 914979 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||| || || | || || |||| || ||| | || || || || ||| |||| Sbjct 914980 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACATTGCAC 915039 Query 178125 CTTGT 178129 ||||| Sbjct 915040 CTTGT 915044 Score = 138 bits (152), Expect = 3e-27 Identities = 145/188 (77%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| || |||||||||||||| || ||| ||||| ||||| || ||||| Sbjct 914577 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAATGTCAAGA 914636 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || || || || |||||||| || | ||||||||||| | Sbjct 914637 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 914696 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTG 178121 | ||||| || ||||| | || |||| |||| || ||| |||| || ||||| || ||| Sbjct 914697 AGCAGCTTGAGGATGGTCGCAC-CTTGTCCGACTACAACATCCAGAAGGAATCTACCCTG 914755 Query 178122 CATCTTGT 178129 ||||| || Sbjct 914756 CATCTCGT 914763 Score = 105 bits (116), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || || || | || || || | ||| Sbjct 915295 CAGATCTTCGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCCAGCGAC 915354 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| |||||||| || || || |||||||||||||| Sbjct 915355 ACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAG 915414 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| ||||| || | || || | || || ||| || Sbjct 915415 CGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAACATC 915474 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 915475 CAGAAGGAGTCTACTCTCCA-CTTG 915498 >seq13 Length=1001457 Score = 104 bits (114), Expect = 6e-17 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| |||||||| || || || || |||||||| || || || Sbjct 407347 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 407288 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 |||||||||||||| || ||||| ||||| | ||||| |||| || ||| |||| || Sbjct 407287 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 407228 Query 178110 GAATCAACACTGCATCTTG 178128 || ||||| || || |||| Sbjct 407227 GAGTCAACCCTCCA-CTTG 407210 >seq14 Length=985265 Score = 91.5 bits (100), Expect = 4e-13 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || || || ||||||||||| || || |||||||||||||| |||||||| Sbjct 862859 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 862918 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||| | |||||| | || || ||| |||| || || || || || || |||| Sbjct 862919 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCA-CTTG 862972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729981598326