Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001642055.1_202016-05-11] 79 sequences; 32,990,834 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq10 147 2e-30 seq13 123 2e-23 seq14 111 1e-19 >seq10 Length=1117896 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || || |||||| || ||||| ||||| ||| Sbjct 915290 CCACCACGGAGACGAAGCACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGAG 915231 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | |||||| |||||||| || || ||||||||||||| ||| Sbjct 915230 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 915171 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | ||| | | | ||||||||| || ||||| Sbjct 915170 ATACCCTCCTTGTCC-TGAATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCAC 915112 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || || || ||||| ||||| ||||| || ||||| Sbjct 915111 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 915064 Score = 116 bits (128), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| || |||||||| ||||| |||||||| Sbjct 914781 CCTCCACGAAGGCGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 914722 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || ||||||||||||||||| |||| |||||| ||||| | |||| Sbjct 914721 AAGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 914662 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | ||||||| ||||| | Sbjct 914661 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG--ATAGTGTCGGAGGACTCAA 914604 Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838 |||| | || || || || || || Sbjct 914603 CCTCGAGGGTGATGGTCTTTCCGGT 914579 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || |||| ||| ||||||||||||||| |||||||| Sbjct 915062 CCACCACGCAGGCGGAGGACAAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCGGAC 915003 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||| ||||| |||||||| || ||||| || || |||| || Sbjct 915002 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 914943 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| ||| ||| ||| | | | |||||| ||||| || Sbjct 914942 ATGCCCTCCTTGTCTTGGATCTTTGACTT-GACGTTGTCGATGGTGTCGGATGACTCAAC 914884 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||| | || || || || || |||| Sbjct 914883 CTCAAGAGTGATGGTCTTGCCGGTCA 914858 >seq13 Length=1001457 Score = 123 bits (136), Expect = 2e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 407190 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 407249 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||| ||||| |||||||| ||||||||||||||||||| |||| Sbjct 407250 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 407309 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || |||||||||| ||| || Sbjct 407310 ATGCCCTCCTTGTCCTGGATCTT 407332 >seq14 Length=985265 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| ||||| || Sbjct 862992 CCACCACGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 862933 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||| |||||||| ||||| ||||| ||||||| |||| Sbjct 862932 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 862873 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 862872 ATGCCCTCCTTGTC 862859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303543474800