Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq23 159 7e-34 >seq23 Length=86929 Score = 159 bits (176), Expect = 7e-34 Identities = 568/870 (65%), Gaps = 27/870 (3%) Strand=Plus/Minus Query 229783 TGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTT--CCTCTGA 229840 ||| | |||||||||||||| | ||| ||||||||||| | ||||| | ||||| Sbjct 35330 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 35271 Query 229841 ACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATTTCATCAAAC 229900 | | ||| | ||||||| || ||||| || ||||| || |||||| | Sbjct 35270 AAG--GACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCC 35213 Query 229901 ACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCT-GCAGACCAA- 229958 || |||| | || ||||||| ||||||||| ||||| | || || || | || | | Sbjct 35212 ACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGAT 35153 Query 229959 -CTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCA 230017 || ||| | ||||| | || |||||||| || || | || ||||| | | Sbjct 35152 TCTCTAGCG---AAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGA 35096 Query 230018 ACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGC 230077 || | || || || || ||||||| |||||| | ||| ||| | | Sbjct 35095 TGGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGA-GCCC 35037 Query 230078 AAGAACGGAACG-AGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCA 230136 ||| | | | | | || || | ||||| || |||||||| | | || ||||| Sbjct 35036 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 34977 Query 230137 AAGTGGGCTCAGAAATGG--CTAGAACCTGGTAAATCG---TTTGCCGAGCGTCTCGTCG 230191 | ||||| | | |||| || || | || || || ||| | || ||||| | Sbjct 34976 GACTGGGCCCTGCGATGGATCTCCGACAAG--AACTCCACATTCGCCAACCGCCTCGTTG 34919 Query 230192 CCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGC 230251 | | | |||||| ||||| | || ||| |||| | ||||||| ||||| Sbjct 34918 CATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCA 34859 Query 230252 GGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGG 230311 ||| ||| ||||||| || || | || |||||| ||||| ||| ||||||| Sbjct 34858 AGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGG 34799 Query 230312 GTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTC 230370 | | || || | | |||| | ||| | | || ||| ||||||||| ||| | Sbjct 34798 GCATGCA-CACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGC--CCAGCC 34742 Query 230371 GAGA--CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTG 230428 ||| | |||| | ||||| || ||||| || || | || |||||||| | | | Sbjct 34741 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 34682 Query 230429 ACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487 |||| | ||||| ||| || | |||||||||||| || ||| | || |||||||| Sbjct 34681 ACGCACTACCATG-CGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAG 34623 Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547 ||||| || ||||| | | | || || || ||| || || ||| || | | ||| Sbjct 34622 TTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAAC 34563 Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607 ||||| | || |||||| |||||| || || ||||||||||||||||| ||||| Sbjct 34562 CCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGC 34503 Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||| | ||||| |||| | | ||||| ||| Sbjct 34502 GTCGGCGACTACCAGAAGGCCGGTGTCATG 34473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057816586306610