Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq88 145 9e-30 >seq88 Length=290544 Score = 145 bits (160), Expect = 9e-30 Identities = 583/904 (64%), Gaps = 18/904 (2%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| || || || || | |||| | | | ||||| || || | ||| ||||||| | Sbjct 180006 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 180065 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| | |||| || | || || ||||| ||||| ||||||||||| ||||| || Sbjct 180066 CCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 180125 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 ||||| | | | ||||| || || ||||| || || ||||| |||| Sbjct 180126 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAA 180184 Query 54130 A-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 | | |||| ||||| || || | ||| |||| | | || || || ||||| || | Sbjct 180185 AGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCAC 180244 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 54248 |||| || | || | ||| ||||| || || || | | ||| ||||| | |||||| | Sbjct 180245 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAG 180304 Query 54249 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 54306 ||| || || || || ||| || ||| | |||||||| | | ||| || Sbjct 180305 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AG 180362 Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 || || || || || | || ||||| || || || || | || || || ||||| Sbjct 180363 GCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCC 180422 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTA 54424 || || || || ||| |||||| | || || || |||||| |||||| | Sbjct 180423 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG--GT 180480 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATT 54483 || ||||| || || || || || || ||||| || || | |||| ||| | |||| | Sbjct 180481 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TC 180539 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATT 54541 ||| |||||||| || ||| || ||| | ||||| || || || |||||||| Sbjct 180540 GTAGGTCTCGATGGC--CTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATG 180597 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 | |||||| || || | || ||| |||| |||||| || | || || ||| Sbjct 180598 AGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCG 180657 Query 54602 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTG 54661 | || || |||||||| | | ||| ||||| || ||||| | ||| | |||||| Sbjct 180658 AGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTG 180717 Query 54662 AGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGG-AGAATG 54720 || | || | | || | | || | | | | || || || || | | Sbjct 180718 AGCTCGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGTCTC 180777 Query 54721 TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGttt 54780 ||| || || || || ||||||||||| | | ||| | | ||| | ||| | || Sbjct 180778 TTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACCACGAGAGAGAATTGCTT 180836 Query 54781 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 54840 ||||| | ||||| ||||||||||| || || | || || || || || || || || Sbjct 180837 CTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTCGGG 180896 Query 54841 ATGT 54844 |||| Sbjct 180897 ATGT 180900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717540428560