Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq23 352 3e-92
seq530 127 2e-24
seq7 95.1 1e-14
seq38 86.0 6e-12
>seq23
Length=86929
Score = 352 bits (390), Expect = 3e-92
Identities = 557/791 (70%), Gaps = 19/791 (2%)
Strand=Plus/Minus
Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698
|||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| |||
Sbjct 35330 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 35271
Query 116699 AAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755
|||||| ||||||| | ||| | ||||| |||||||| |||||| |||
Sbjct 35270 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 35211
Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTC 116815
|| || ||||| ||||| ||| ||| ||||| ||||||||||| || || ||||| |||
Sbjct 35210 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATTC 35151
Query 116816 GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAG 116875
|| || || || | ||||||| || ||||||||||| || || ||| ||||||
Sbjct 35150 TCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGAG 35091
Query 116876 AACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG--- 116932
||||| ||||| || | || || ||||||||||| ||| | || |||
Sbjct 35090 AACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGC------GAGCCC 35037
Query 116933 GAGAAGCTCCGTT---TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989
|| ||| | | | | || ||||||||||| | || || ||| || ||||||||
Sbjct 35036 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 34977
Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049
|| ||||| ||||| |||||| ||| || | || | |||| | | ||||| || ||
Sbjct 34976 GACTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCA 34917
Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109
||||| || || ||||| ||||||| || ||||||| |||| || |||||||||
Sbjct 34916 TTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAG 34857
Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169
|| ||||| || |||||||| || || ||| ||||||||||||||| | ||||||||
Sbjct 34856 AAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGC 34797
Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229
|||| |||||| ||||| | || ||| | | | | | || ||| | | |
Sbjct 34796 ATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAG 34737
Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289
||||| | ||| |||| || || |||| || |||||| ||| | | ||| ||
Sbjct 34736 TCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCA 34677
Query 117290 CTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCG 117347
|| || |||| |||||| || | || || | | |||| ||||||||||||||||
Sbjct 34676 CTACC-ATGCGCTCTGCTCGGCATGAA-CGCTACTCTCATGTGCCAATACATCGAGTTCG 34619
Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407
|||| ||| | |||||| | | || | | || |||| |||| || | |||||||
Sbjct 34618 TCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAACCCCT 34559
Query 117408 TGGACTTTATG 117418
| ||||| |||
Sbjct 34558 TCGACTTCATG 34548
>seq530
Length=496674
Score = 127 bits (140), Expect = 2e-24
Identities = 152/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || ||||| |||||||| |||| || ||| | | |
Sbjct 171049 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 171108
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| ||||| || || | ||||| ||||| || || |||||||
Sbjct 171109 GACACTATTGACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCA 171167
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || ||||||| ||| || || ||| |||| |||| || || ||| |||||||||
Sbjct 171168 ACAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAA 171227
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
|||||| |||||| |||| || ||
Sbjct 171228 CATCCAAAAGGAGTCCACACTTCA 171251
Score = 122 bits (134), Expect = 9e-23
Identities = 151/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| ||||| |||||||| | || || || | |||||| | | | |||| |||||
Sbjct 170845 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACG-TCAAGTC 170903
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
||| || | ||||| ||||||||||| |||| |||||||| || |||| ||| || ||
Sbjct 170904 AAAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAA 170963
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| || || |||| |||||||| |||||||||||| ||||||||| |||| |||||
Sbjct 170964 GCAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCA 171023
Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || | ||| || | || ||
Sbjct 171024 CCTTGTCCTCCGCCTGCGCGGTGG 171047
Score = 107 bits (118), Expect = 2e-18
Identities = 136/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771
|||| || || ||||||||| |||| || || | | |||| | | | |||||
Sbjct 170562 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGA 170621
Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831
|| || | ||||| |||||||| ||| | |||||||| || | |||| ||| ||||
Sbjct 170622 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 170681
Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891
| ||||| || || | |||||||| ||||||||||||||||||||| | || ||||
Sbjct 170682 AGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGC 170741
Query 40892 ATCTAGT 40898
|||| ||
Sbjct 170742 ATCTCGT 170748
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || ||||| || | || ||||| | | |
Sbjct 171277 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 171336
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||| || || | ||||| ||||| ||||| | ||||||
Sbjct 171337 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 171396
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| ||| || || |||||||| |||| || || ||| |||||||||
Sbjct 171397 CAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 171456
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| | || || ||
Sbjct 171457 ATCCAGAAGGAGTCTACTCTCCA 171479
>seq7
Length=239904
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| |||||||||| || || |||| ||| || || ||||| ||
Sbjct 146 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 205
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| | ||||| || ||||||||||||||||||||| |||| || ||
Sbjct 206 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCA 255
>seq38
Length=207270
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| |||||||| ||| ||||||| || || || |||| ||| || || || || ||
Sbjct 118596 GACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCCGGAAAGCAACTCGAG 118537
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|| | ||||| || |||||||||||||||||||||| | || || ||
Sbjct 118536 GATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACCCTCCA 118487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515215677188720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |