Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq530 113 4e-20
seq7 109 5e-19
seq38 102 7e-17
seq132 82.4 7e-11
>seq530
Length=496674
Score = 113 bits (124), Expect = 4e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||| | ||| ||||| || ||||||||||| ||| || ||||| |||||||| ||
Sbjct 171024 GTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTG 170965
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
||||| ||| |||| || || |||||||| ||||| ||||||||||||||| || ||
Sbjct 170964 CTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTT 170905
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
| || || | |||| |||||| | ||| ||||| | || | || ||||||||
Sbjct 170904 TGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGT 170845
Query 118715 CA 118716
||
Sbjct 170844 CA 170843
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||||| |||||||| || || |||||||| || | || || || ||
Sbjct 171486 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 171427
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || |||||| |||||||||||||||| || ||||| || |||||||||||
Sbjct 171426 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 171367
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||||| | |||||| || | || | || ||
Sbjct 171366 GATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTT 171307
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||||| || ||||| ||||||||
Sbjct 171306 TCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | ||| ||||| ||||| |||||||| ||| | ||| || || ||
Sbjct 171258 CACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTC 171199
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| ||||| ||| ||||||||||||| || || ||||| || ||||||||||||
Sbjct 171198 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTG 171139
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707
|| || || || | || | ||||| | || | || ||||||| || | || |
Sbjct 171138 GATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGAT-TCCACCTCGAGCGTGATGGTCT 171080
Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| ||||| || || || || || |||||
Sbjct 171079 TGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049
Score = 82.4 bits (90), Expect = 7e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
||||| || || || |||||||| ||| || ||||| |||||| ||||| || ||
Sbjct 170736 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCG 170677
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | |||||||| || || || |||||||||||||| || || ||
Sbjct 170676 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 170617
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| | |||| ||||| | ||| ||||||| ||| | || || |||||
Sbjct 170616 ACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 170564
>seq7
Length=239904
Score = 109 bits (120), Expect = 5e-19
Identities = 95/118 (81%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || |||||||| || | |||||| |||||||
Sbjct 261 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCG 202
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
||||| ||||| ||| |||| ||||||||||| || || || ||||||||||||||||
Sbjct 201 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTG 144
>seq38
Length=207270
Score = 102 bits (112), Expect = 7e-17
Identities = 92/116 (79%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || || |||||||| ||| || |||||| |||||||
Sbjct 118481 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCG 118540
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || ||||| ||| |||| || ||||| || || || || ||||||||||||||
Sbjct 118541 AGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 118596
>seq132
Length=173857
Score = 82.4 bits (90), Expect = 7e-11
Identities = 57/65 (88%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642
|||||||||||| ||||| ||| |||| ||||||||||| || || || |||||||||||
Sbjct 8 ATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 67
Query 118643 GTCTG 118647
|||||
Sbjct 68 GTCTG 72
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433827507842524
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |