Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq530 141 1e-28 >seq530 Length=496674 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | |||| ||||||||| || ||||| || | ||||| || | Sbjct 171264 ACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCC 171205 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| || ||||| ||||| ||||| ||||| | || | | |||||| Sbjct 171204 GTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 171145 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| || |||| ||| | || |||||||| |||||||| |||| ||||| Sbjct 171144 GTCTTGGATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGA 171086 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || ||||| || ||||||||||| Sbjct 171085 TGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||||||||| || | | ||| | |||||| || | || |||||| || || |||| Sbjct 171511 CCTATTGTCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGT 171452 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || | || || || |||| || ||||||||||||||||| ||||| |||||||||| Sbjct 171451 AGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGT 171392 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 43128 | | || | | |||||||||| ||| || || | | | | ||||||||| | Sbjct 171391 CAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAG 171332 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || | || ||||| || || || || ||||| |||||||| ||||| Sbjct 171331 ACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813690197160