Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq530 141 1e-28
>seq530
Length=496674
Score = 141 bits (156), Expect = 1e-28
Identities = 163/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | |||||| || | |||| ||||||||| || ||||| || | ||||| || |
Sbjct 171264 ACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCC 171205
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || | |||||| || ||||| ||||| ||||| ||||| | || | | ||||||
Sbjct 171204 GTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 171145
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGA 43146
||| ||| || |||| ||| | || |||||||| |||||||| |||| |||||
Sbjct 171144 GTCTTGGATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGA 171086
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| ||||| || || ||||| || |||||||||||
Sbjct 171085 TGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049
Score = 127 bits (140), Expect = 2e-24
Identities = 169/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008
|||||||||| || | | ||| | |||||| || | || |||||| || || ||||
Sbjct 171511 CCTATTGTCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGT 171452
Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068
| || | || || || |||| || ||||||||||||||||| ||||| ||||||||||
Sbjct 171451 AGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGT 171392
Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 43128
| | || | | |||||||||| ||| || || | | | | ||||||||| |
Sbjct 171391 CAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAG 171332
Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || || | || ||||| || || || || ||||| |||||||| |||||
Sbjct 171331 ACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571813690197160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |