Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq530 150 1e-31 >seq530 Length=496674 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | ||||||| ||| | |||| || ||||| ||||||||||| || Sbjct 171504 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 171445 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| |||| |||| |||||| || ||||| ||||| ||||||||||| || Sbjct 171444 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGG 171385 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||||| || | | |||| ||| | || ||||| Sbjct 171384 GATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGAC 171325 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || ||||| ||||| || |||||||||||||| Sbjct 171324 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || || || |||||||||||||| || |||| |||| Sbjct 171260 AGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 171201 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||| ||||| ||||| ||||| || | | ||||||||| Sbjct 171200 TCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCT 171141 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | ||||| || || | ||||||||| Sbjct 171140 TGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTC 171081 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || || ||||| ||||| Sbjct 171080 TTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || ||||| | || || ||||| ||||||||||||||| Sbjct 171047 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 170988 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || ||||| || || || ||||| || || Sbjct 170987 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 170928 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | | | | || | |||| || || || Sbjct 170927 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 170868 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| |||||||| Sbjct 170867 TCAAGAGTGATGGTCTTGCCGGT 170845 Score = 86.0 bits (94), Expect = 4e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||||||| || | || || | ||||||||| ||||| Sbjct 170731 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAA 170672 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||||||||| ||| | || ||||||||| ||||| ||| | || Sbjct 170671 GATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATT 170612 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367 | | || | || | || || || || | |||||||| || ||||||| Sbjct 170611 GTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGTGA 170562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069846220320