Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq88 104 5e-17
>seq88
Length=290544
Score = 104 bits (114), Expect = 5e-17
Identities = 436/685 (64%), Gaps = 19/685 (3%)
Strand=Plus/Minus
Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877
||| | ||||||| |||||| || || || || ||||||||| || | ||||||
Sbjct 180683 TACCAGTTCTTTGGTTTCAAGACACTCGAACGTTCATATCTCCTCCGCATAAACGGCAAG 180624
Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937
||| || || || |||||| | ||||| || ||||| || |||||| ||||||
Sbjct 180623 GTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGCGATGAC 180564
Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997
|| |||| | ||||||| ||| | ||| | || | | ||||| ||| |
Sbjct 180563 ATCGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCG 180504
Query 248998 CCGACGCTCTTCAACGCCGGTAC--CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055
|||||| | |||||||| || || | ||| || || || || ||||| || | |
Sbjct 180503 CCGACGTTGTTCAACGCGGGCACACCATCACCA--CAAATGTCGTCATGCTTCCTCATCG 180446
Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGA 249112
|||| | || ||| ||||||||||||| ||||| || | |||| ||| ||
Sbjct 180445 ACATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCA---AGACCTGTGCGTTGA 180389
Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172
| || || ||| ||||| || || ||| ||| | ||| || || | || || |
Sbjct 180388 TCTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCAT 180329
Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232
||||| || || || || | ||||| || | ||| | || || | |
Sbjct 180328 ACATCGGTGGCACTAACGGAACATCTAATGGTCTCATTCCCATGCTCCGTGTATACAACA 180269
Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGT 249286
||| || | | || |||||| || ||| | | || | |||||||| |
Sbjct 180268 ACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTCGCCATCT 180212
Query 249287 ATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCA 249346
| | || |||||||| || | || | ||||| ||| || |||||| ||||||
Sbjct 180211 ACCTCGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCA 180152
Query 249347 ACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGC 249406
| ||| | | || || || |||||||||| |||||| | | ||| | ||||||
Sbjct 180151 AGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGA 180092
Query 249407 GCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCA 249466
|| || | | | ||||| | ||||| || | | ||| ||| ||| | ||||
Sbjct 180091 AGCGTGTTCAAGACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCG 180032
Query 249467 TCGATCTACACGGCGCCGACTTCGA 249491
|||| | |||| | || |||||
Sbjct 180031 CCGATGTCTACGGTGAAGAATTCGA 180007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073758874575296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |