Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq88 354 7e-93 seq23 167 2e-36 seq530 111 1e-19 >seq88 Length=290544 Score = 354 bits (392), Expect = 7e-93 Identities = 1206/1857 (65%), Gaps = 46/1857 (2%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || ||||| |||||||| ||||| ||||| |||||| | ||| || || | Sbjct 178883 TGGTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAG 178942 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 | || | || || | | ||| | ||||| | || | ||||||| ||| || | Sbjct 178943 AAGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAA 179002 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || || || || |||||||| | || | | ||| ||| || ||||| |||| Sbjct 179003 TGAAAGCACCACGGTCAGCGGCCATCTCAATGATCCTTCGCTGCGAGATCTCCCAGACGG 179062 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTA 22381 ||||||| || | | |||| || || | | || |||| | || || | Sbjct 179063 TCTTGTAAAGGGTCTTTGTCTCCTCAGGGAT-GTTGGGAATCCTGGCAATCGAACCTCCA 179121 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | || ||||| ||| ||| || | || ||| Sbjct 179122 TCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTG 179181 Query 22442 ACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499 | || ||| |||| || || || ||||| || | | ||| ||||| || |||| Sbjct 179182 AGCAACCATG--GGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGT 179239 Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559 |||| ||| | || ||||| | || ||||| ||||| ||||| | || || || || | Sbjct 179240 TGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTG 179299 Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCA 22619 |||| || || | || |||||||| | | ||||||| | ||| || ||| || Sbjct 179300 GCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAG 179359 Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACAC 22677 || ||||||||| || || | || || ||||| |||||||||||| || | | || Sbjct 179360 ACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATT---CCACATATCGTACTGGAGGATAC 179416 Query 22678 GCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTC 22737 | | || || | | | |||||||| || | ||| |||||| | | || | || Sbjct 179417 CCTGGGATACGG-GAGAT-CCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTC 179474 Query 22738 GCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTCG- 22795 ||| | | || | | || || ||||||||||||| |||| | ||| Sbjct 179475 GCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTT 179534 Query 22796 -GCGGCGGC-GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCT 22853 || || | ||| ||| | || | || | | ||| || || || | ||| | Sbjct 179535 AGCTTCGTCTGAC----TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTT 179590 Query 22854 GAACGCCTATACCGATCGGTCGGTTTTTCAGATT----CGACACTTTTGCCTCGGGCAAA 22909 |||| || |||||||| ||||||| | || || | |||||| | | Sbjct 179591 GAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCG----TGCCTCTTCGACA 179646 Query 22910 GGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNN 22969 || || || ||||| | |||||||||| | ||| || | | || | Sbjct 179647 GGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCG 179706 Query 22970 NNNNNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATC 23026 | ||||| | ||||| | ||||| | ||||| | ||| | Sbjct 179707 TGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGA 179766 Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || || | ||||| || || ||||| || | |||||||| ||||| || || || Sbjct 179767 GAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCAC 179826 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || |||||||||| || || ||||| | ||| Sbjct 179827 AGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCC 179886 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 ||||||||||| | || | || |||||| ||| | ||| | ||| || ||| | Sbjct 179887 TTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGC 179946 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTC--CTCGTACTTTTGGTACAACG 23264 | || ||| ||||| ||| | || ||| |||| | |||||| | | ||||| | Sbjct 179947 TTTTGTGCGCGAACA-GTCTCGCGACCCTTG-TTCTGCTTCTCGTAGCTCTCGTACAGAG 180004 Query 23265 CGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 | || ||||| ||||||| ||| ||||| ||||| || | | |||| ||||| || Sbjct 180005 CTTCGAATTCTTCACCGTAGACA-TCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGT 180063 Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| | || | || ||| || |||| || || || || ||||| ||||||||| Sbjct 180064 GTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 180123 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || || ||||| ||||| |||||||| |||||| |||||| || || | ||| | Sbjct 180124 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCA 180183 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || ||||| || ||||| ||||||||||| | ||| || || || || | ||| ||||| Sbjct 180184 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCA 180243 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| ||||| || || || ||||||||||| || | ||||| || | |||||| || Sbjct 180244 CCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTA 180303 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 || | ||| ||| | | || || | || |||| | ||| |||| || Sbjct 180304 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGG 180363 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || | | || || |||| ||| || || || |||||||| ||||| Sbjct 180364 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 180423 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 |||||||||||||| || | ||| | ||| || || |||||||| | | || || Sbjct 180424 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTG 180483 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTA 23802 | || ||||| ||||| |||||| || ||||| | ||||| ||| | ||| Sbjct 180484 CCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCGTA 180542 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || |||||||| || ||||| || ||||| || || | || || ||||| | ||| Sbjct 180543 GGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCAT 180602 Query 23863 GTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919 || ||| || | || ||||| | |||||| || || ||||||||||||| | Sbjct 180603 GTGTTGTGGGCGCTCGGCGACCTT---GCCGTTTATGCGGAGGAGATATGAACGTTCGAG 180659 Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || || || ||||| | | ||||| |||||||| |||| || || ||||| || Sbjct 180660 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 180716 >seq23 Length=86929 Score = 167 bits (184), Expect = 2e-36 Identities = 474/724 (65%), Gaps = 11/724 (2%) Strand=Plus/Minus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| || || || || ||||||| || || | ||||| || Sbjct 35330 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 35271 Query 57633 AAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689 ||||| || ||| ||| | | |||| || ||| | || || ||| Sbjct 35270 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 35211 Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 || | || || ||||| || |||||||| ||||| |||||||| | || || |||| Sbjct 35210 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATTC 35151 Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 || ||||| ||| | | ||||| ||||||| ||||| || ||| | || || Sbjct 35150 TCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGAG 35091 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869 ||||| || ||||| | || || || |||||||| || ||| | | || | | || Sbjct 35090 AACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCAG 35031 Query 57870 AA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTG 57928 | ||| || |||||||| ||||| | || ||| ||| ||||||||| || || Sbjct 35030 CGCAGGTAC-CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGACTG 34972 Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTT 57985 | | | |||||| || || | |||| |||||| | | || | || || Sbjct 34971 GGCCCTGCGATGGATCTC---CGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATT 34915 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045 |||||| || || ||||| ||||| || || || | || || ||| | ||||| Sbjct 34914 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 34855 Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105 ||||| ||||||||||| || || || ||||||| | || || || |||||||| | Sbjct 34854 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCAT 34795 Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCG 58165 || || || || || ||||| | | ||||| | | | || || || | | || Sbjct 34794 GCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGTC 34735 Query 58166 CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225 || | || ||||| || || |||| ||| || | ||||| | | ||| || || Sbjct 34734 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 34675 Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285 ||| || ||||||| |||||| | | | |||| | ||||| ||||| || || Sbjct 34674 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 34615 Query 58286 CGAC 58289 ||| Sbjct 34614 TGAC 34611 >seq530 Length=496674 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| || ||||| |||| || ||| | | Sbjct 171049 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 171108 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| || || |||||||| || | || || ||||| Sbjct 171109 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 171168 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || |||||||||||| ||| | ||| || ||| Sbjct 171169 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 171228 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || ||||| |||| ||| | || | || |||| Sbjct 171229 ATCCAAAAGGAGTCCACACTTCACTTGGTGCTTCGTCTCCGTGGTGGTA 171277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763352072240