Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq88 354 7e-93
seq23 167 2e-36
seq530 111 1e-19
>seq88
Length=290544
Score = 354 bits (392), Expect = 7e-93
Identities = 1206/1857 (65%), Gaps = 46/1857 (2%)
Strand=Plus/Plus
Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202
|||| || ||||| |||||||| ||||| ||||| |||||| | ||| || || |
Sbjct 178883 TGGTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAG 178942
Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262
| || | || || | | ||| | ||||| | || | ||||||| ||| || |
Sbjct 178943 AAGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAA 179002
Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322
| || || || || || |||||||| | || | | ||| ||| || ||||| ||||
Sbjct 179003 TGAAAGCACCACGGTCAGCGGCCATCTCAATGATCCTTCGCTGCGAGATCTCCCAGACGG 179062
Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTA 22381
||||||| || | | |||| || || | | || |||| | || || |
Sbjct 179063 TCTTGTAAAGGGTCTTTGTCTCCTCAGGGAT-GTTGGGAATCCTGGCAATCGAACCTCCA 179121
Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441
| | ||||| || || || | || ||||| ||| ||| || | || |||
Sbjct 179122 TCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTG 179181
Query 22442 ACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499
| || ||| |||| || || || ||||| || | | ||| ||||| || ||||
Sbjct 179182 AGCAACCATG--GGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGT 179239
Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559
|||| ||| | || ||||| | || ||||| ||||| ||||| | || || || || |
Sbjct 179240 TGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTG 179299
Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCA 22619
|||| || || | || |||||||| | | ||||||| | ||| || ||| ||
Sbjct 179300 GCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAG 179359
Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACAC 22677
|| ||||||||| || || | || || ||||| |||||||||||| || | | ||
Sbjct 179360 ACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATT---CCACATATCGTACTGGAGGATAC 179416
Query 22678 GCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTC 22737
| | || || | | | |||||||| || | ||| |||||| | | || | ||
Sbjct 179417 CCTGGGATACGG-GAGAT-CCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTC 179474
Query 22738 GCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA-TTCG- 22795
||| | | || | | || || ||||||||||||| |||| | |||
Sbjct 179475 GCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTT 179534
Query 22796 -GCGGCGGC-GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCT 22853
|| || | ||| ||| | || | || | | ||| || || || | ||| |
Sbjct 179535 AGCTTCGTCTGAC----TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTT 179590
Query 22854 GAACGCCTATACCGATCGGTCGGTTTTTCAGATT----CGACACTTTTGCCTCGGGCAAA 22909
|||| || |||||||| ||||||| | || || | |||||| | |
Sbjct 179591 GAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCG----TGCCTCTTCGACA 179646
Query 22910 GGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNN 22969
|| || || ||||| | |||||||||| | ||| || | | || |
Sbjct 179647 GGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCG 179706
Query 22970 NNNNNNNNNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATC 23026
| ||||| | ||||| | ||||| | ||||| | ||| |
Sbjct 179707 TGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGA 179766
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|| || | ||||| || || ||||| || | |||||||| ||||| || || ||
Sbjct 179767 GAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCAC 179826
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| ||| | || || || | || |||||||||| || || ||||| | |||
Sbjct 179827 AGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCC 179886
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
||||||||||| | || | || |||||| ||| | ||| | ||| || ||| |
Sbjct 179887 TTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGC 179946
Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTC--CTCGTACTTTTGGTACAACG 23264
| || ||| ||||| ||| | || ||| |||| | |||||| | | ||||| |
Sbjct 179947 TTTTGTGCGCGAACA-GTCTCGCGACCCTTG-TTCTGCTTCTCGTAGCTCTCGTACAGAG 180004
Query 23265 CGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323
| || ||||| ||||||| ||| ||||| ||||| || | | |||| ||||| ||
Sbjct 180005 CTTCGAATTCTTCACCGTAGACA-TCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGT 180063
Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383
|||| | || | || ||| || |||| || || || || ||||| |||||||||
Sbjct 180064 GTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 180123
Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443
|| || ||||| ||||| |||||||| |||||| |||||| || || | ||| |
Sbjct 180124 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCA 180183
Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503
|| ||||| || ||||| ||||||||||| | ||| || || || || | ||| |||||
Sbjct 180184 AAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCA 180243
Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563
||||| ||||| || || || ||||||||||| || | ||||| || | |||||| ||
Sbjct 180244 CCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTA 180303
Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623
|| | ||| ||| | | || || | || |||| | ||| |||| ||
Sbjct 180304 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGG 180363
Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683
|| || || || | | || || |||| ||| || || || |||||||| |||||
Sbjct 180364 CCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCG 180423
Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743
|||||||||||||| || | ||| | ||| || || |||||||| | | || ||
Sbjct 180424 TCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTG 180483
Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTA 23802
| || ||||| ||||| |||||| || ||||| | ||||| ||| | |||
Sbjct 180484 CCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCGTA 180542
Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862
|| |||||||| || ||||| || ||||| || || | || || ||||| | |||
Sbjct 180543 GGTCTCGATGGCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCAT 180602
Query 23863 GTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919
|| ||| || | || ||||| | |||||| || || ||||||||||||| |
Sbjct 180603 GTGTTGTGGGCGCTCGGCGACCTT---GCCGTTTATGCGGAGGAGATATGAACGTTCGAG 180659
Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
|| || || ||||| | | ||||| |||||||| |||| || || ||||| ||
Sbjct 180660 TGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 180716
>seq23
Length=86929
Score = 167 bits (184), Expect = 2e-36
Identities = 474/724 (65%), Gaps = 11/724 (2%)
Strand=Plus/Minus
Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632
||| | |||||||| ||||| || || || || ||||||| || || | ||||| ||
Sbjct 35330 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 35271
Query 57633 AAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689
||||| || ||| ||| | | |||| || ||| | || || |||
Sbjct 35270 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 35211
Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749
|| | || || ||||| || |||||||| ||||| |||||||| | || || ||||
Sbjct 35210 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATTC 35151
Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809
|| ||||| ||| | | ||||| ||||||| ||||| || ||| | || ||
Sbjct 35150 TCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGAG 35091
Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869
||||| || ||||| | || || || |||||||| || ||| | | || | | ||
Sbjct 35090 AACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCAG 35031
Query 57870 AA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTG 57928
| ||| || |||||||| ||||| | || ||| ||| ||||||||| || ||
Sbjct 35030 CGCAGGTAC-CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGACTG 34972
Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTT 57985
| | | |||||| || || | |||| |||||| | | || | || ||
Sbjct 34971 GGCCCTGCGATGGATCTC---CGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATT 34915
Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045
|||||| || || ||||| ||||| || || || | || || ||| | |||||
Sbjct 34914 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 34855
Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105
||||| ||||||||||| || || || ||||||| | || || || |||||||| |
Sbjct 34854 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCAT 34795
Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCG 58165
|| || || || || ||||| | | ||||| | | | || || || | | ||
Sbjct 34794 GCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGTC 34735
Query 58166 CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225
|| | || ||||| || || |||| ||| || | ||||| | | ||| || ||
Sbjct 34734 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 34675
Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285
||| || ||||||| |||||| | | | |||| | ||||| ||||| || ||
Sbjct 34674 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 34615
Query 58286 CGAC 58289
|||
Sbjct 34614 TGAC 34611
>seq530
Length=496674
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| ||||| ||||| || ||||| |||| || ||| | |
Sbjct 171049 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 171108
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| || || |||||||| || | || || |||||
Sbjct 171109 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 171168
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| || || |||||||||||| ||| | ||| || |||
Sbjct 171169 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 171228
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| || || || ||||| |||| ||| | || | || ||||
Sbjct 171229 ATCCAAAAGGAGTCCACACTTCACTTGGTGCTTCGTCTCCGTGGTGGTA 171277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445763352072240
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