Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq88 147 3e-30 >seq88 Length=290544 Score = 147 bits (162), Expect = 3e-30 Identities = 587/907 (65%), Gaps = 24/907 (3%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 |||||| || || || | |||| | | | | ||| || || | ||| ||||||| | Sbjct 180006 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 180065 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| | |||| || | || || ||||| ||||| ||||||||||| ||||| || Sbjct 180066 CCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 180125 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 ||||| | | | ||||| || || ||||| || || ||||| |||| Sbjct 180126 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAA 180184 Query 63368 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426 | | |||| ||||| || || | ||| ||||| | | || || || ||||| || | Sbjct 180185 AGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCAC 180244 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 |||| || | || | ||| ||||| || || || | | ||| ||||| | ||| || | Sbjct 180245 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAG 180304 Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAG 63544 || | || || || || ||| || ||| | |||||||| | | ||| || Sbjct 180305 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AG 180362 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 || || || || || | || ||||| || || || || | ||||| || ||||| Sbjct 180363 GCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCC 180422 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGAGTA 63662 || ||||| || || |||||| | || || || |||||| |||||| | || Sbjct 180423 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG-GT- 180480 Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATT 63721 || ||||| || || || || || || ||||| || || | |||| ||| | |||| | Sbjct 180481 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TC 180539 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATT 63779 ||| ||||| || || ||| || ||| | ||||| || || || |||||||| Sbjct 180540 GTAGGTCTCGATGGC--CTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATG 180597 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | |||||| || || | || | | ||| |||||| | | || || ||| Sbjct 180598 AGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCG 180657 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 63899 | || || |||||||| | | ||| ||||| || ||||| | ||| |||| ||| Sbjct 180658 AGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTG 180717 Query 63900 AGCTTATCCTTATATTTGTTAACTATATCCATGGTAAT---ACTTGAAATAATCGG-AGA 63955 |||| || | | | | | ||| || || || | || || || || | Sbjct 180718 AGCTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGT 180774 Query 63956 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 64015 | ||| || || || || || ||||||||| | | ||| || | ||| | ||| | Sbjct 180775 CTCTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACCACGAGAGAGAATTG 180833 Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 || ||||| | |||||| |||||||||| || || | || || || || || || || Sbjct 180834 CTTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTC 180893 Query 64076 CGGATGT 64082 |||||| Sbjct 180894 GGGATGT 180900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813293622160