Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq88 172 8e-38 >seq88 Length=290544 Score = 172 bits (190), Expect = 8e-38 Identities = 589/904 (65%), Gaps = 18/904 (2%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 |||||| || || || | |||||| | | ||||| || |||| || ||||||| | Sbjct 180006 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 180065 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| | || | || | || || ||||| ||||| ||||||||||| ||||| || Sbjct 180066 CCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 180125 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | | | |||||| || || ||||| || || ||||| |||| Sbjct 180126 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAA 180184 Query 80040 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 | | |||| ||||| || || | ||| ||||| | | || || || ||||| || | Sbjct 180185 AGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCAC 180244 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | || | ||| ||||| || || || | | ||| ||||| | |||||| | Sbjct 180245 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAG 180304 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 80216 |||| || || || || ||| || ||| | |||||||| | | ||| || Sbjct 180305 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AG 180362 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 || || || || || | || ||||| || || || || | || || || ||||| Sbjct 180363 GCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCC 180422 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTA 80334 || ||||| || || |||||| | || || || |||||| |||||| | Sbjct 180423 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG--GT 180480 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATT 80393 || ||||| || || || || || || ||||| || || | |||| ||||| |||| | Sbjct 180481 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TC 180539 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTG--ATGAATTCCTACCGCGACACGCATT 80451 ||| ||||| || || |||| || ||| | ||||| || || || |||||||| Sbjct 180540 GTAGGTCTCGATGGC--CTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATG 180597 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 | |||||| || || | || ||| |||| ||||| | | || || ||| Sbjct 180598 AGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCG 180657 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 80571 | || || |||||||| | | ||| ||||| || ||||| | ||| |||||||| Sbjct 180658 AGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTG 180717 Query 80572 AGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGG-AGAATG 80630 || | || | | || | | || | | || | || || || || | | Sbjct 180718 AGCTCGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGTCTC 180777 Query 80631 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 80690 ||| || || || || || ||||||||| | | ||| || | ||| | ||| | || Sbjct 180778 TTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACCACGAGAGAGAATTGCTT 180836 Query 80691 ttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGG 80750 ||||| | |||||| ||||||||||| || || | || || | || || || || || Sbjct 180837 CTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTCGGG 180896 Query 80751 ATGT 80754 |||| Sbjct 180897 ATGT 180900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263888837080