Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq88 172 7e-38 >seq88 Length=290544 Score = 172 bits (190), Expect = 7e-38 Identities = 749/1161 (65%), Gaps = 34/1161 (3%) Strand=Plus/Plus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 || ||||| ||| |||| || ||||| || ||||||| || | ||| || | | ||| Sbjct 179757 CAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAAT 179816 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 |||||||| || || | |||||| || | || | || || ||||| ||| Sbjct 179817 CTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT 179876 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || || ||||| || || ||||| || ||||||| || |||| | || | || || Sbjct 179877 GCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGC 179936 Query 71874 TTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT-TTCT-CTT-TCGTAT-T 71929 | ||| | | | || | | ||| | | ||| |||| ||| ||||| | Sbjct 179937 GTACCAAAGCTTTTGTGCGCGAAC---AGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCT 179993 Query 71930 GT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTC 71988 | ||| | | |||||| || || || | ||| | | | ||||| || || ||| Sbjct 179994 CTCGTACAGAGC--TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTC 180051 Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 || ||||||| || ||| | || | || | || || ||||| ||||| ||||||||| Sbjct 180052 GGGCACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATC 180111 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || ||||| || ||||| | | | |||||| || || ||||| || Sbjct 180112 CACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 180171 Query 72109 TCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 || ||||| |||| | | |||| ||||| || || | ||| ||||| | | || || Sbjct 180172 TCAAGGAA-GCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGG 180230 Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 || ||||| || ||||| || | || | ||| ||||| || || || | | ||| || Sbjct 180231 ACGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGG 180290 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--A 72285 ||| | |||||| |||| || || || || ||| || ||| | |||||||| Sbjct 180291 AATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCG 180350 Query 72286 TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 72345 ||| ||| || || || || || || | || ||||| || || || || | Sbjct 180351 GTGCACGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGT 180408 Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405 || || || ||||| || || || || ||| |||||| | || || || |||||| Sbjct 180409 GTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATT 180468 Query 72406 --TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 72463 |||||| | || ||||| || || || || || || ||||| || || | |||| Sbjct 180469 TGTGGTGATG--GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTT 180526 Query 72464 CAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCTA 72520 ||||| |||| | ||| ||||| || || |||| || ||| | || || || | Sbjct 180527 GAGACATGTAG-TCGTAGGTCTCGATGGC--CTTCTCGATGTCATCGCCGTGAATGCCAA 180583 Query 72521 CCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 72580 | || |||||||| | ||| || || || | || ||| |||| ||||| | | Sbjct 180584 CAGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGA 180643 Query 72581 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 72640 || || ||| | || || |||||||| | | ||| ||||| || ||||| | Sbjct 180644 GATATGAACGTTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGA 180703 Query 72641 TAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTG 72697 ||| |||| ||||| | || | | | | | ||| || || ||| | | Sbjct 180704 CGATAGCCGAGTTGAGCTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCAG 180760 Query 72698 AAATAATCGG-AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 72756 | || || || | | ||| || || || || || ||||||||| | | ||| || | | Sbjct 180761 AGATCATGGGTTGTCTCTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACC 180819 Query 72757 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 72816 || | ||| | || ||||| | |||||| ||||||||||| || || | || || Sbjct 180820 ACGAGAGAGAATTGCTTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCG 180879 Query 72817 AGAATGGCATAATCTGGATGT 72837 || || || || || |||||| Sbjct 180880 AGGATTGCGTAGTCGGGATGT 180900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134611085720