Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq88 172 7e-38
>seq88
Length=290544
Score = 172 bits (190), Expect = 7e-38
Identities = 749/1161 (65%), Gaps = 34/1161 (3%)
Strand=Plus/Plus
Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753
|| ||||| ||| |||| || ||||| || ||||||| || | ||| || | | |||
Sbjct 179757 CAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAAT 179816
Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813
|||||||| || || | |||||| || | || | || || ||||| |||
Sbjct 179817 CTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT 179876
Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873
|| || ||||| || || ||||| || ||||||| || |||| | || | || ||
Sbjct 179877 GCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGC 179936
Query 71874 TTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT-TTCT-CTT-TCGTAT-T 71929
| ||| | | | || | | ||| | | ||| |||| ||| ||||| |
Sbjct 179937 GTACCAAAGCTTTTGTGCGCGAAC---AGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCT 179993
Query 71930 GT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTC 71988
| ||| | | |||||| || || || | ||| | | | ||||| || || |||
Sbjct 179994 CTCGTACAGAGC--TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTC 180051
Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048
|| ||||||| || ||| | || | || | || || ||||| ||||| |||||||||
Sbjct 180052 GGGCACATCAGTGTCCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATC 180111
Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108
|| ||||| || ||||| | | | |||||| || || ||||| ||
Sbjct 180112 CACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 180171
Query 72109 TCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167
|| ||||| |||| | | |||| ||||| || || | ||| ||||| | | || ||
Sbjct 180172 TCAAGGAA-GCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGG 180230
Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227
|| ||||| || ||||| || | || | ||| ||||| || || || | | ||| ||
Sbjct 180231 ACGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGG 180290
Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--A 72285
||| | |||||| |||| || || || || ||| || ||| | ||||||||
Sbjct 180291 AATGAGACCATTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCG 180350
Query 72286 TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 72345
||| ||| || || || || || || | || ||||| || || || || |
Sbjct 180351 GTGCACGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGT 180408
Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405
|| || || ||||| || || || || ||| |||||| | || || || ||||||
Sbjct 180409 GTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATT 180468
Query 72406 --TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 72463
|||||| | || ||||| || || || || || || ||||| || || | ||||
Sbjct 180469 TGTGGTGATG--GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTT 180526
Query 72464 CAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCTA 72520
||||| |||| | ||| ||||| || || |||| || ||| | || || || |
Sbjct 180527 GAGACATGTAG-TCGTAGGTCTCGATGGC--CTTCTCGATGTCATCGCCGTGAATGCCAA 180583
Query 72521 CCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACA 72580
| || |||||||| | ||| || || || | || ||| |||| ||||| | |
Sbjct 180584 CAGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGA 180643
Query 72581 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 72640
|| || ||| | || || |||||||| | | ||| ||||| || ||||| |
Sbjct 180644 GATATGAACGTTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGA 180703
Query 72641 TAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTG 72697
||| |||| ||||| | || | | | | | ||| || || ||| | |
Sbjct 180704 CGATAGCCGAGTTGAGCTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCAG 180760
Query 72698 AAATAATCGG-AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 72756
| || || || | | ||| || || || || || ||||||||| | | ||| || | |
Sbjct 180761 AGATCATGGGTTGTCTCTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACC 180819
Query 72757 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 72816
|| | ||| | || ||||| | |||||| ||||||||||| || || | || ||
Sbjct 180820 ACGAGAGAGAATTGCTTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCG 180879
Query 72817 AGAATGGCATAATCTGGATGT 72837
|| || || || || ||||||
Sbjct 180880 AGGATTGCGTAGTCGGGATGT 180900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671134611085720
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