Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23 293 3e-74 seq88 154 2e-32 >seq23 Length=86929 Score = 293 bits (324), Expect = 3e-74 Identities = 583/856 (68%), Gaps = 23/856 (3%) Strand=Plus/Minus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| | |||||||| ||||| |||| || || ||||| | || ||| |||| || ||| Sbjct 35330 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 35271 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 |||||||| |||| ||| | | ||| | | || ||||| || || || ||| Sbjct 35270 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 35211 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | |||||||| || | ||||||||| || |||||||| || || ||||| ||||| Sbjct 35210 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAG-CGATT 35152 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 |||| || | || || |||| ||||| ||||| |||||||||||||| || Sbjct 35151 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 35092 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCA 125317 |||||| ||||| || | |||||| || || |||| |||||| |||| || ||| Sbjct 35091 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCA 35032 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377 || | || ||||| ||||| ||||||| | || | || || || ||||| | Sbjct 35031 GCGCAGGTAC---CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGA 34975 Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 |||| | || |||||| ||| | || || | | |||| || | || || ||||| Sbjct 34974 CTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATT 34915 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 |||||| || ||||| |||||||| ||| ||| || ||||||| ||||||||||| Sbjct 34914 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 34855 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 |||||| || |||||||| || || | |||||| | || ||||| ||||||||| | Sbjct 34854 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCAT 34795 Query 125558 ACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAG 125617 ||| ||||| ||| || || || || ||| | |||| || |||| Sbjct 34794 GCACACCGACTTCGCCTGCCTTCTCTT------CTCTCT---CCTCGAGAACAAGCCCAG 34744 Query 125618 CGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAAC 125677 | || |||| || | || || ||||| ||| || || ||||| | | Sbjct 34743 CCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAG 34684 Query 125678 CGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGA 125737 ||| | ||||| | || | ||||||||| | || |||||| | ||||| || Sbjct 34683 CGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGA 34624 Query 125738 GTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAA 125794 ||| || || || ||||| |||| | | ||| || |||| | ||| |||||| Sbjct 34623 GTTCGTCGCTGACCGTCTGCTGT---TGGCCCTCGGCAACGTCAAGGTCTACCACGCCAC 34567 Query 125795 GAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 || ||||| || |||||| | ||| || || | |||||||||||||| |||||||| Sbjct 34566 CAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAA 34507 Query 125855 GAAGGTCAGCGAGTAC 125870 | ||| |||| ||| Sbjct 34506 GCGCGTCGGCGACTAC 34491 >seq88 Length=290544 Score = 154 bits (170), Expect = 2e-32 Identities = 319/472 (68%), Gaps = 2/472 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || ||||| || | ||| ||||| | || || |||||||| ||| Sbjct 180248 CAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCTCGAGCCATGGCACGCTGAC 180189 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || |||| ||| | || ||||||| ||| ||| || |||| || || | || Sbjct 180188 GTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGAT 180129 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || || ||| | || || | ||||||||||| || | ||| ||| || Sbjct 180128 CTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTTCAAGACAACGGCAAC 180069 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || |||||||| || || || || || ||||| || || ||||| || Sbjct 180068 TGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTC 180009 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGCACG 97174 || || |||| | ||||||| | || | | || ||||| ||| |||| Sbjct 180008 GAAGCTCTGTACGAGAGCTACGAGAAGCAGAACAAGGGTCGCGAGACTGTTCG-CGCACA 179950 Query 97175 AGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 | | || ||| | |||||| | ||| ||| |||||||| | || | || ||||| Sbjct 179949 AAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATGCTCTA 179890 Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 |||||| | || ||||| |||||||| || | || |||||| ||||||| Sbjct 179889 CAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGCTCCAA 179830 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 |||||||| || ||||| |||||| || |||| || ||| || |||||| Sbjct 179829 CCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGC 179778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054133007720