Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq530 86.0 5e-12 seq132 84.2 2e-11 >seq530 Length=496674 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| || || ||||| || | | ||| | |||| || Sbjct 171486 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 171427 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || | || || | |||||| || || | ||||| ||||| Sbjct 171426 CAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 171367 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || ||||| | | ||| || |||| || ||| ||| | |||||||| || Sbjct 171366 GATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTT 171307 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| |||||||| || ||||| Sbjct 171306 TCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277 >seq132 Length=173857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATT-TTGGT 21196 || |||||||| || |||||||| ||||| || | ||||| || ||||| | ||| | Sbjct 66583 GAAGTTGCCCAAGTCACCGACGTGGCGCTCCTCGTCCTCGGGGGCACCGTGTGTCTTGTT 66524 Query 21197 GCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 | | ||||| ||||| |||||||| ||||||||||| || ||||||| || ||| Sbjct 66523 GTGG-GGGTTGAAGTGGGGACCGGCGGATGTGCAGCCGTTTGTGTTGTCGCCAAAGGCGT 66465 Query 21257 GAACGTGAAAGCC 21269 | ||||| | ||| Sbjct 66464 GGACGTGCATGCC 66452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414570036224518