Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq530 98.7 9e-16
>seq530
Length=496674
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | || || |||||||| | ||| || ||| | ||| | || ||
Sbjct 171258 CACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTC 171199
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||| |||||| | ||||| | | || || || ||||||||||| || ||||| |
Sbjct 171198 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTG 171139
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976
|| || | ||||||| | | | |||||| || || || || || | ||||||||| |
Sbjct 171138 GATCTTCGACTTGACGTTGTCAATAGTGTC-GCTTGATTCCACCTCGAGCGTGATGGTCT 171080
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| ||||| || || || || ||||| |||||
Sbjct 171079 TGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855
||||||||| | |||||| ||||| || | ||| || || | | || ||| | ||
Sbjct 171486 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGCGTTCGGCCGTCT 171429
Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915
|||||||| || || | ||||| | | ||||| || ||||| ||||| || |||||
Sbjct 171428 TCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 171369
Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGT 94974
| || || | ||| || | ||| ||||| || | ||||| || | || |||||
Sbjct 171368 TGGATCTTGGACTTTACATTGTCGATCGTGTC-GCTAGACTCGACTTCCAATGTAATGGT 171310
Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| |||||||| || ||||||||||||||
Sbjct 171309 CTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448288134808920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |