Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq530 98.7 9e-16 >seq530 Length=496674 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || |||||||| | ||| || ||| | ||| | || || Sbjct 171258 CACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTC 171199 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| |||||| | ||||| | | || || || ||||||||||| || ||||| | Sbjct 171198 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTG 171139 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976 || || | ||||||| | | | |||||| || || || || || | ||||||||| | Sbjct 171138 GATCTTCGACTTGACGTTGTCAATAGTGTC-GCTTGATTCCACCTCGAGCGTGATGGTCT 171080 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || || || ||||| ||||| Sbjct 171079 TGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCC 94855 ||||||||| | |||||| ||||| || | ||| || || | | || ||| | || Sbjct 171486 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTC--TGAGAGCGTTCGGCCGTCT 171429 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || || | ||||| | | ||||| || ||||| ||||| || ||||| Sbjct 171428 TCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 171369 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGT 94974 | || || | ||| || | ||| ||||| || | ||||| || | || ||||| Sbjct 171368 TGGATCTTGGACTTTACATTGTCGATCGTGTC-GCTAGACTCGACTTCCAATGTAATGGT 171310 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| |||||||| || |||||||||||||| Sbjct 171309 CTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288134808920