Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq142 114 2e-21 seq21 104 4e-18 >seq142 Length=1086544 Score = 114 bits (126), Expect = 2e-21 Identities = 216/328 (66%), Gaps = 55/328 (17%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || |||||||| || ||||| ||||| |||| Sbjct 1070286 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACTAAGCCCGCTA 1070228 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAA------------------GCGTG------ 16526 |||||||||| |||||||||||||| ||||| || || Sbjct 1070227 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCAGCCAGTAAGCATGCCCAAC 1070168 Query 16527 ----------TCT-------------------CTGGATTGGTCTATGAAGAGATTCGTGA 16557 ||| ||| | || |||| ||||||| |||| Sbjct 1070167 ATCGTCGCTATCTAGGACAAATCCTAACATGACTGCAGTGATCTACGAAGAGACCCGTGG 1070108 Query 16558 TGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| | |||| ||||||| ||| |||||||| ||| || || ||| || |||||||| Sbjct 1070107 TGTCCTCAAGACCTTCCTCGAGAGCGTTATCCGTGACGCCGTCACCTACACTGAGCACGC 1070048 Query 16618 TAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAA 16677 || || ||||||||||||||| | || | ||||| || | || || || ||||||| Sbjct 1070047 CAAGCGCAAGACTGTCACCTCCCTCGACGTTGTCTACGCTCTCAAGCGCCAGGGCCGTAC 1069988 Query 16678 GATTTATGGTTTTGGAAGTTAATCTTCT 16705 | || ||||| || ||||| | ||| Sbjct 1069987 CCTCTACGGTTTCGGTGGTTAAACATCT 1069960 >seq21 Length=306248 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || |||||||| || ||||| ||||| ||||| Sbjct 221582 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACAAAGCCCGCTAT 221640 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || ||||||||||| ||||||||| |||| Sbjct 221641 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 221679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074699874071