Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq88 161 1e-34
>seq88
Length=290544
Score = 161 bits (178), Expect = 1e-34
Identities = 589/907 (65%), Gaps = 24/907 (3%)
Strand=Plus/Plus
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
|||||| || || || | |||| | | | ||||| || || | ||| ||||||| |
Sbjct 180006 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 180065
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256
||| | |||| || | || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 180066 CCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 180125
Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316
||||| | | | ||||| || || ||||| || || ||||| ||||
Sbjct 180126 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAA 180184
Query 63317 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375
| | |||| ||||| || || | ||| ||||| | | || || || ||||| || |
Sbjct 180185 AGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCAC 180244
Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435
|||| || | || | ||| ||||| || || || | | ||| ||||| | ||| || |
Sbjct 180245 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAG 180304
Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 63493
|| | || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 180305 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AG 180362
Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553
|| || || || || | || ||||| || || || || | ||||| || || ||
Sbjct 180363 GCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCC 180422
Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTA 63611
|| ||||| || || |||||| | || || || |||||| |||||| |
Sbjct 180423 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG--GT 180480
Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATT 63670
|| ||||| || || || || || || ||||| || || | |||| ||| | |||| |
Sbjct 180481 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TC 180539
Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATT 63728
||| ||||| || || ||| || ||| | ||||| || || || ||||||||
Sbjct 180540 GTAGGTCTCGATGGC--CTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATG 180597
Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788
| |||||| || || | || ||| |||| |||||| | | || || |||
Sbjct 180598 AGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCG 180657
Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63848
| || || |||||||| | | ||| ||||| || ||||| | ||| ||||||||
Sbjct 180658 AGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTG 180717
Query 63849 AGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT---ACTTGAAATAATCGG-AGA 63904
|| | || | | | | | ||| || || ||| | || || || || |
Sbjct 180718 AGCTCGTCTTGGTGT---TCCATTATGACCTTGTAGATGTGATCAGAGATCATGGGTTGT 180774
Query 63905 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 63964
| ||| || || || || || ||||||||| | | ||| || | ||| | ||| |
Sbjct 180775 CTCTTT-CCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACCACGAGAGAGAATTG 180833
Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024
|| ||||| | |||||| ||||||||||| || || | || || || || || || ||
Sbjct 180834 CTTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTC 180893
Query 64025 CGGATGT 64031
||||||
Sbjct 180894 GGGATGT 180900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622942940598520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |