Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq88 280 4e-70 seq527 84.2 6e-11 >seq88 Length=290544 Score = 280 bits (310), Expect = 4e-70 Identities = 536/779 (69%), Gaps = 12/779 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| |||| || ||| ||| || || || | ||||| ||||| || Sbjct 180518 TTCACACACGCCTCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCA 180459 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || |||||| || || | |||||||| |||| Sbjct 180458 TGCTTCCTCATCGACATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCAAGACC 180399 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 ||||| | || ||||||| || ||||| ||||| | | || | ||| ||||||| Sbjct 180398 TGTGCGTTGATCTCCAAGACCGCTGGCGGTATTGGCCTCAACG-TGCACCGCATTCGTGC 180340 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||| | ||||| ||| || ||||| || |||||||||| | Sbjct 180339 TACTGG-CTCATACATCGGTGGCACTAACGGAACATCTAATGGTCTCATTCCCATGCTCC 180281 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| | |||| ||||| | || |||||||||||||| ||||| ||| || | Sbjct 180280 GTGTATACAACAACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCT 180221 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || || || |||||||| || || || | |||| || ||||| || || || | Sbjct 180220 TCGCCATCTACCTCGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGA 180161 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | || || || ||||| ||||| || || ||| || |||||| Sbjct 180160 ACCACGGCAAGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACC 180101 Query 363965 ATTTTATGAAGCGCGTGGAGG-CAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAAT 364021 || |||||||| || | | || | | || ||| |||| | ||||| |||| | Sbjct 180100 TCTTCATGAAGCGTGTTCAAGACA---ACGGCAACTGGACACTGATGTGCCCGAACGAGT 180044 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081 | || || || ||||||| | ||||| || | | ||||| ||||| | || || Sbjct 180043 GCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAGA 179984 Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 | || |||| ||| |||| ||| |||||| ||||| |||| |||||| | || Sbjct 179983 AGCAGAACAAGGGTCGCGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGG 179924 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | |||| ||||| || | |||| |||| | ||||| || | |||||||||||| || Sbjct 179923 CACAGACCGAGACTGGTAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCA 179864 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260 ||||| || |||| ||||| || | |||| | ||||| || || |||||| | || ||| Sbjct 179863 ACCAGAAGAACCTCGGTACCATCC-GCAGCTCCAACCTGTGCACTGAGATTGTGGAGTAC 179805 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 |||||||| || ||| || || || ||| | || || | || || || | ||||| Sbjct 179804 ACCGCTCCTGATGAGGTCGCTGTTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGT 179746 Score = 149 bits (164), Expect = 2e-30 Identities = 358/542 (66%), Gaps = 0/542 (0%) Strand=Plus/Minus Query 364615 ACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674 || || || || || || | || ||||| | |||||| ||| | ||||||||||| Sbjct 179444 ACCTACGAAGGATCTCCCGTATCCCAGGGTATCCTCCAGTACGATATGTGGAATGTCACA 179385 Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734 || ||| || ||| |||||| | || || || |||| ||| ||| Sbjct 179384 CCTACTGACCTCTGGGACTGGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGC 179325 Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 ||||| || | | || |||||||| || || || ||| ||||||| || || |||||| Sbjct 179324 AACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAAC 179265 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 ||||||||||| || | || ||| | ||||| ||||| || || | || || || Sbjct 179264 GAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTC 179205 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 | ||| || || | | ||||||| ||| |||| || |||||| ||| | | Sbjct 179204 CAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAAC 179145 Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974 ||||||||| ||||||||||| | ||||| | | ||||| | || || Sbjct 179144 ATGAAGAACCGTATCATCGCCGATGGAGGTTCGATTGCCAGGATTCCCAACATCCCTGAG 179085 Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATG 365034 || ||| | ||||||| ||||| ||||| || || ||||| ||||||| ||| Sbjct 179084 GAGACAAAGACCCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCATTGAGATG 179025 Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094 || || || || |||||||| || ||| |||||| | ||| | ||||| || Sbjct 179024 GCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACATGAAGGAG 178965 Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154 || || | |||| | || || ||||| || || ||||| | ||||| ||||| Sbjct 178964 CCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTCAAGACT 178905 Query 365155 GG 365156 || Sbjct 178904 GG 178903 >seq527 Length=259400 Score = 84.2 bits (92), Expect = 6e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 65871 GTTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACG 65930 |||||| | |||||||| || ||| |||| |||||| ||||| || |||| ||| Sbjct 132341 GTTACGCACGGTTCCGTCGTACTTGACCATAACATCTTCGAGCGCCTTGACGAGACGACG 132400 Query 65931 CTGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGA 65990 |||||||||||| | | ||||| || || || ||||||| | ||||||||| || | Sbjct 132401 TTGGATGTAACCAGTCTCGGCAGTCTTGACTGCTGTATCAATCAAACCTTCACGACCAGC 132460 Query 65991 CATTGC 65996 ||| || Sbjct 132461 CATGGC 132466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303344465527754