Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq88 280 4e-70
seq527 84.2 6e-11
>seq88
Length=290544
Score = 280 bits (310), Expect = 4e-70
Identities = 536/779 (69%), Gaps = 12/779 (2%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| |||||| |||| || ||| ||| || || || | ||||| ||||| ||
Sbjct 180518 TTCACACACGCCTCGCCGACGTTGTTCAACGCGGGCACACCATCACCACAAATGTCGTCA 180459
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| || |||||| || || | |||||||| ||||
Sbjct 180458 TGCTTCCTCATCGACATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCAAGACC 180399
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
||||| | || ||||||| || ||||| ||||| | | || | ||| |||||||
Sbjct 180398 TGTGCGTTGATCTCCAAGACCGCTGGCGGTATTGGCCTCAACG-TGCACCGCATTCGTGC 180340
Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
|| | | ||||| | ||||| ||| || ||||| || |||||||||| |
Sbjct 180339 TACTGG-CTCATACATCGGTGGCACTAACGGAACATCTAATGGTCTCATTCCCATGCTCC 180281
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
|||| | |||| ||||| | || |||||||||||||| ||||| ||| || |
Sbjct 180280 GTGTATACAACAACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCT 180221
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
| || || || |||||||| || || || | |||| || ||||| || || || |
Sbjct 180220 TCGCCATCTACCTCGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGA 180161
Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|| || || ||||| | || || || ||||| ||||| || || ||| || ||||||
Sbjct 180160 ACCACGGCAAGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACC 180101
Query 363965 ATTTTATGAAGCGCGTGGAGG-CAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAAT 364021
|| |||||||| || | | || | | || ||| |||| | ||||| |||| |
Sbjct 180100 TCTTCATGAAGCGTGTTCAAGACA---ACGGCAACTGGACACTGATGTGCCCGAACGAGT 180044
Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAAT 364081
| || || || ||||||| | ||||| || | | ||||| ||||| | || ||
Sbjct 180043 GCCCTGGCCTCGCCGATGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAGA 179984
Query 364082 CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141
| || |||| ||| |||| ||| |||||| ||||| |||| |||||| | ||
Sbjct 179983 AGCAGAACAAGGGTCGCGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGG 179924
Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201
| |||| ||||| || | |||| |||| | ||||| || | |||||||||||| ||
Sbjct 179923 CACAGACCGAGACTGGTAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCA 179864
Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATAC 364260
||||| || |||| ||||| || | |||| | ||||| || || |||||| | || |||
Sbjct 179863 ACCAGAAGAACCTCGGTACCATCC-GCAGCTCCAACCTGTGCACTGAGATTGTGGAGTAC 179805
Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319
|||||||| || ||| || || || ||| | || || | || || || | |||||
Sbjct 179804 ACCGCTCCTGATGAGGTCGCTGTTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGT 179746
Score = 149 bits (164), Expect = 2e-30
Identities = 358/542 (66%), Gaps = 0/542 (0%)
Strand=Plus/Minus
Query 364615 ACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACG 364674
|| || || || || || | || ||||| | |||||| ||| | |||||||||||
Sbjct 179444 ACCTACGAAGGATCTCCCGTATCCCAGGGTATCCTCCAGTACGATATGTGGAATGTCACA 179385
Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734
|| ||| || ||| |||||| | || || || |||| ||| |||
Sbjct 179384 CCTACTGACCTCTGGGACTGGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGC 179325
Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794
||||| || | | || |||||||| || || || ||| ||||||| || || ||||||
Sbjct 179324 AACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAAC 179265
Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854
||||||||||| || | || ||| | ||||| ||||| || || | || || ||
Sbjct 179264 GAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTC 179205
Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914
| ||| || || | | ||||||| ||| |||| || |||||| ||| | |
Sbjct 179204 CAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAAC 179145
Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974
||||||||| ||||||||||| | ||||| | | ||||| | || ||
Sbjct 179144 ATGAAGAACCGTATCATCGCCGATGGAGGTTCGATTGCCAGGATTCCCAACATCCCTGAG 179085
Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATG 365034
|| ||| | ||||||| ||||| ||||| || || ||||| ||||||| |||
Sbjct 179084 GAGACAAAGACCCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCATTGAGATG 179025
Query 365035 GCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAG 365094
|| || || || |||||||| || ||| |||||| | ||| | ||||| ||
Sbjct 179024 GCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACATGAAGGAG 178965
Query 365095 CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACA 365154
|| || | |||| | || || ||||| || || ||||| | ||||| |||||
Sbjct 178964 CCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTCAAGACT 178905
Query 365155 GG 365156
||
Sbjct 178904 GG 178903
>seq527
Length=259400
Score = 84.2 bits (92), Expect = 6e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 65871 GTTACGAATCGTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACG 65930
|||||| | |||||||| || ||| |||| |||||| ||||| || |||| |||
Sbjct 132341 GTTACGCACGGTTCCGTCGTACTTGACCATAACATCTTCGAGCGCCTTGACGAGACGACG 132400
Query 65931 CTGGATGTAACCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGA 65990
|||||||||||| | | ||||| || || || ||||||| | ||||||||| || |
Sbjct 132401 TTGGATGTAACCAGTCTCGGCAGTCTTGACTGCTGTATCAATCAAACCTTCACGACCAGC 132460
Query 65991 CATTGC 65996
||| ||
Sbjct 132461 CATGGC 132466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303344465527754
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |