Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq88 192 6e-44 seq23 150 2e-31 seq530 113 4e-20 seq7 84.2 2e-11 >seq88 Length=290544 Score = 192 bits (212), Expect = 6e-44 Identities = 923/1451 (64%), Gaps = 45/1451 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || || | ||||| || |||| | ||| || ||| | || Sbjct 179194 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 179253 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| |||||||| || || | || | || || |||||| || | Sbjct 179254 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 179313 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | ||||||| || | ||||| || | |||| ||||| Sbjct 179314 AGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 179373 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || ||| || | || | |||||| |||||||| | || |||| | |||| Sbjct 179374 AGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGAT 179433 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 |||| ||| ||||| | ||||||| || |||| ||||| | |||| Sbjct 179434 CCTTCGTAGGTCTTGTAA--GGACCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAG 179491 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 | | || || |||||| ||||| |||||||| | | ||||| || |||| Sbjct 179492 CAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGA 179551 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | || | ||| || | || |||||||| || || || | |||| |||||||| | Sbjct 179552 AAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTC 179611 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535 | || | |||||| | ||| |||| ||| || | || ||||| || | Sbjct 179612 GGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGATGATCT 179671 Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC---C 145592 | |||||||| || || |||| ||| | | | | ||| | ||||||||| | Sbjct 179672 TGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACGC 179731 Query 145593 GAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 |||| || |||| | | | | | ||| | || ||||| || ||||| || Sbjct 179732 CGGCCTTGTAGTCGACAAAAGA---AGGCAGGGCAAGAGAAGCCAAGTTGCAAACAGCGA 179788 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 ||| || | || |||| | || ||||| | ||||| ||| | |||||| | Sbjct 179789 CCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTAC 179848 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 | || || | ||| || || || | |||||| ||||||||||||||||| | || | Sbjct 179849 CGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTAC 179908 Query 145773 CAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCT--GCGCACGCACCTGCTG 145830 ||||||| ||| | ||| | ||| || ||| | | | || || || || Sbjct 179909 CAGTCTCGGTCTGTGCCTCAAGGATGG--CGTACCAAAGCTTTTGTGCGCGAACAGTCTC 179966 Query 145831 CTGGTAGCGGCCCTC-TTCT-----TCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 ||| |||| |||| ||||| || ||| || | || || | ||| Sbjct 179967 ------GCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACC 180020 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 |||| ||||| ||||| || |||| ||| || |||||||| | ||| ||||||| | Sbjct 180021 GTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTC 180080 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTT 146004 | || |||| ||| || | || || | |||||| ||||| | | ||||| || Sbjct 180081 TTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCG 180140 Query 146005 GCAATCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCC 146063 | ||||| || ||| | || || | ||| | | | ||| ||| ||||||| Sbjct 180141 GACCTCCTCCTTGCCGTGGTTCTTGCG-CAGGTCAAGGAAGCCAAAGACGTCAGCGTGCC 180199 Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGAC 146120 | || || | |||| ||||| ||| ||| || ||| ||||||||||| || | | Sbjct 180200 ATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAGC 180259 Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT-- 146178 | | ||||||| | || || | |||||| || || | | | ||||| || Sbjct 180260 GAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAGTGC 180319 Query 146179 -AGAGTT-TATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236 | | | ||| | ||| | || | || || || || | ||| | |||||| Sbjct 180320 CACCGATGTAT----GAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCA 180375 Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 || |||||| || || ||| ||| || ||||| |||||||| ||||| || Sbjct 180376 GCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCC 180435 Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGA 146354 |||| ||| ||| || ||||| || |||| || | || || ||||| || Sbjct 180436 TCCTTC--ATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGA 180493 Query 146355 ACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATC-ATCCGATACGTTTCGATA 146413 |||||||||| ||||| || || ||| | ||| | || || || ||||| Sbjct 180494 ACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCG-TAGGTCTCGATG 180552 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 || | | ||||| ||||| |||||||| | ||| || ||||||||||||||||| || Sbjct 180553 GCCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGG 180612 Query 146474 CGCTCCGCCAC 146484 ||||| || || Sbjct 180613 CGCTCGGCGAC 180623 >seq23 Length=86929 Score = 150 bits (166), Expect = 2e-31 Identities = 350/518 (68%), Gaps = 15/518 (3%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | |||||||| |||||||||| || |||||| | || | | | Sbjct 35000 ATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAAGAACTCC 34941 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || |||||| | || | || || || || ||| ||||| |||| || || | Sbjct 34940 ACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCT 34881 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || ||| ||||||| | |||| || | || | | |||||||| || || || ||| Sbjct 34880 TTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTC-TGATGCCCGGTCTAACATTCTCCAA 34822 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTG---TCTCTACTATAA 46319 |||||| || || || ||||||||| |||| || ||||| || || ||||| || | Sbjct 34821 CGAGCTCATCTCTCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCT 34762 Query 46320 CACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGC-ATGTTCAAGGAGGCGG 46378 | |||| | || | | ||| || || | || | |||| || ||| || || | Sbjct 34761 C-CTCGAGAACAAGCCCAGC-----CCAGAGTCTGT-CAGAGCTATCATCACTGAAGCCG 34709 Query 46379 TGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACG 46438 | | |||||| ||||||| || | | |||||| || || ||||| |||||||||| Sbjct 34708 TCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACG 34649 Query 46439 C-ACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCAC 46497 | || ||| ||||| | ||||||||||| || || ||||| ||||| || || | Sbjct 34648 CTACTCTCA-TGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGC 34590 Query 46498 CAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557 | ||| | ||||| ||| || || || || ||| | ||||| || |||| Sbjct 34589 AACGTCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCT 34530 Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || || || || || ||||| |||||||||||||| || Sbjct 34529 GGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 34492 >seq530 Length=496674 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | || ||||||||||| |||||||| ||| Sbjct 171275 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 171216 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | |||||| || ||| |||| | |||||| ||||||||||| Sbjct 171215 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 171156 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | ||| ||| | || || | Sbjct 171155 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 171096 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || ||||| || ||||| Sbjct 171095 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 171049 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| || || | || |||||||| || |||||||| || Sbjct 171503 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 171444 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 171443 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGAGGG 171384 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || ||| | ||||||| Sbjct 171383 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACT 171324 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || ||||| ||||| || || || |||||||| Sbjct 171323 TCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 171277 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||| || ||||| || |||||||| ||| | Sbjct 170766 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 170707 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 170706 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 170647 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||| || | ||||| | Sbjct 170646 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACC 170587 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || ||||| Sbjct 170586 TCGAGGGTGATGGTCTTTCCGGT 170564 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| || || || | || | || |||||||| ||||||||||| ||| | Sbjct 171047 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 170988 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| || ||||| || ||| |||| | || ||||| ||||||||| Sbjct 170987 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 170928 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 170927 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 170868 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | || | ||| || ||||| Sbjct 170867 TCAAGAGTGATGGTCTTGCCGGT 170845 >seq7 Length=239904 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | ||| |||||||| || |||||||| || Sbjct 279 CCACCACGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 220 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| | ||||||||||||||| || Sbjct 219 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 160 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 159 ATGCCCTCCTTGTC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009572612480