Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq430 140 2e-28 seq250 109 4e-19 >seq430 Length=7832 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1683 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1742 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1743 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1777 >seq250 Length=464797 Score = 109 bits (120), Expect = 4e-19 Identities = 207/302 (69%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| | |||||||||||||| ||| ||||||| ||||| |||| || | Sbjct 439798 ATGTCACCGACCCCTTCTACCGCTACAAGATGGAGCGCATCCAGTCCAAGATCGAAGGCA 439857 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| ||||| || || ||||||||||||||| || || ||| || | |||| | Sbjct 439858 AGGGCAACGGCATCAAGACCGTCATTGTCAACCTGAGCAGCGTGGCTCAGTCTCTCGCCC 439917 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 |||| | | || | || || || || | |||||| || |||||||| || | Sbjct 439918 GCCCCCCTGCTCACGTCATCAAGTACTTTGGTTTCGAACTCGGAGCTCAGAC-CAACACG 439976 Query 6367 A-TCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGAC 6425 | | ||| | || || | ||| | ||||| | ||| || | |||||| |||||| Sbjct 439977 AGCCCCAACGATGACCGTTGGATCATCAACGGTGCCCATGACGCCAGCAAGCTCCAGGAC 440036 Query 6426 TTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACC 6485 | ||||| ||||| || ||||| || || || | | ||| | ||||| |||||| Sbjct 440037 TACCTTGATGGCTTCATCTCAAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACC 440096 Query 6486 GA 6487 || Sbjct 440097 GA 440098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944967053557