Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq88 167 3e-36
>seq88
Length=290544
Score = 167 bits (184), Expect = 3e-36
Identities = 588/906 (65%), Gaps = 22/906 (2%)
Strand=Plus/Plus
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051
|||||| || || || | |||| | | || ||||| || || | ||| ||||||| |
Sbjct 180006 TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGT 180065
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111
||| | |||| || | || || ||||| ||||| ||||||||||| ||||| ||
Sbjct 180066 CCAGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAA 180125
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
||||| | | | ||||| || || ||||| || || ||||| ||||
Sbjct 180126 GAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAA-GCCAA 180184
Query 63172 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230
| | |||| ||||| || || | ||| ||||| | | || || || ||||| || |
Sbjct 180185 AGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCAC 180244
Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290
|||| || | || | ||| ||||| || || || | | ||| ||||| | |||||| |
Sbjct 180245 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAG 180304
Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 63348
|||| || || || || ||| || ||| | |||||||| | | ||| ||
Sbjct 180305 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG--AG 180362
Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408
|| || || || || | || ||||| || || || || | || || || |||||
Sbjct 180363 GCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCC 180422
Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT--TGGTGACGACTA 63466
|| || || || ||| |||||| | || || || |||||| |||||| |
Sbjct 180423 GTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATG--GT 180480
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATT 63525
|| ||||| || || || || || || ||||| || || | |||| ||| | |||| |
Sbjct 180481 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TC 180539
Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATT 63583
||| ||||| || || ||| || ||| | ||||| || || || ||||||||
Sbjct 180540 GTAGGTCTCGATGGC--CTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATG 180597
Query 63584 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63643
| |||||| || || | || ||| |||| |||||| | | || || |||
Sbjct 180598 AGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAACGTTCG 180657
Query 63644 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 63703
| || || |||||||| | | ||| ||||| || ||||| | ||| ||||||||
Sbjct 180658 AGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTTG 180717
Query 63704 AGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGT 63763
|| | || | | || | | || | | | | || || || || |||
Sbjct 180718 AGCTCGTCTTGGTGTTCCATTATGACCTTGTAGATGTGATCAGAGATCATGGG---TTGT 180774
Query 63764 ---TTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 63820
|| || || || || |||||||||||| | | ||| || | ||| | ||| |
Sbjct 180775 CTCTTTCCGTTCTTGGGGTTGACATAGTTGTACAGATCTTCTACCACGAGAGAGAATTGC 180834
Query 63821 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880
|| ||||| | ||||| ||||||||||| || || | || || || || || || ||
Sbjct 180835 TTCTTTGTCTGCTTGTGAAGATTTGATACAGCGATACGCGCAGCGAGGATTGCGTAGTCG 180894
Query 63881 GGATGT 63886
||||||
Sbjct 180895 GGATGT 180900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633627667541200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |