Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq530 122 7e-23 seq7 86.0 5e-12 seq38 82.4 6e-11 >seq530 Length=496674 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || |||||| | | | Sbjct 171049 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 171108 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || |||||||||||||||||||| || || ||| Sbjct 171109 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 171168 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||||| || || ||| || ||||||| |||||| Sbjct 171169 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 171228 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| || ||||| Sbjct 171229 ATCCAAAAGGAGTCCAC 171245 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||||||||| || || | |||| ||| | ||| | |||| | Sbjct 170845 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 170904 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 170905 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 170964 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | ||||| ||||||| | ||||| ||||||||||| || || ||||| | || Sbjct 170965 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 171024 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || ||||||| ||| Sbjct 171025 CTTGTCCTCCGCCTGCGCGGTGGT 171048 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || | | || || | ||| || |||| Sbjct 170564 ACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGAGC 170623 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || | || || |||||||| Sbjct 170624 AAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 170683 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| | ||||| |||||||| || || ||||| ||| | ||| Sbjct 170684 CAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGCAT 170743 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || | || | || |||||| Sbjct 170744 CTCGTCCTCCGTCTTCGTGGAGGT 170767 >seq7 Length=239904 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| || || || || ||||| || || ||||| || ||| | || Sbjct 145 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGA 204 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||| |||||| | || || |||||||| || || || |||||| | || || || Sbjct 205 GGATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCACTTGGT 261 >seq38 Length=207270 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || ||||| || || || || ||||| || Sbjct 118605 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCCGGAAAG 118546 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| |||||| | ||||| |||||||| || || || || ||| | || Sbjct 118545 CAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACCCTCCAC 118486 Query 22423 TTAGT 22427 || || Sbjct 118485 TTGGT 118481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725201857055