Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq345 109 1e-18 seq324 91.5 3e-13 >seq345 Length=740673 Score = 109 bits (120), Expect = 1e-18 Identities = 172/244 (70%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| ||||| |||||||||||||| || | | || || || || || Sbjct 344024 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGCTCGCTTTGGCGCGTGCTATGCTTATG 344083 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || || || || || || || || ||||||||| |||| ||||||| ||| Sbjct 344084 CGTGCGGACGTGCTTCTTCTCGACGAACCCACCAACCACTTGGATGTTGCCAACGTTGCC 344143 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGA-----AGAATGTTTCTTCCCTCATTGTCTCTC 279870 ||||| | ||||| | ||||| | ||| || || | | || ||||||| Sbjct 344144 TGGCTCGGAAAGTACCT--CAAGTCTCACACCGAGA---TTACTAGCTTGATCGTCTCTC 344198 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 ||||||| || ||||| || | || ||| | | |||| ||||| |||||||| || Sbjct 344199 ACGACTCCGGTTTCCTCGACGAGGTCTGCACAGACATCTACCACTACGAGCAAAA---GA 344255 Query 279931 AGCT 279934 |||| Sbjct 344256 AGCT 344259 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235 ||||| |||| ||||| ||||| ||||| || ||||| | || |||||||||| | | Sbjct 344504 ATTGGCGCCAACGGTGCTGGTAAATCTACTCTCATCAAGATGCTTACTGGCGAGA-CTAT 344562 Query 280236 GCCAC-TGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 || | || || |||| |||||| |||||| |||| || | |||| || ||||| Sbjct 344563 TCCTCAAGAAGGTACCGTCGAGAAGCACCCCAACTTGCGTATCGGTTACATCAAGCAGCA 344622 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 |||| || | ||| | |||| ||| |||| | ||| || ||||| || | || ||||| Sbjct 344623 CGCTCTCGAGCACGTTGAGATGCACATGGAGAAGACGCCCAACCAGTATCTCCAATGGCG 344682 Query 280355 CTATGC 280360 || || Sbjct 344683 ATACGC 344688 >seq324 Length=373952 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279378 GCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGG 279437 || || |||| ||||||||||| ||| |||| ||| |||||||||| | || Sbjct 360383 GCCTACGGTGCTAAGATTCTGCTCAACCAGACCCATCTCCGTCTCAAGCGTGGTCAGCGT 360324 Query 279438 TATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAAC 279497 || |||||| |||| ||||| || | || |||| |||||| |||||||| || ||| Sbjct 360323 TACGGTCTCCTCGGACCCAACGGTTCCGGAAAGACCACTCTCATGCGCGCTATCAACAAC 360264 Query 279498 GGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557 | ||| | || || || || || | ||||| | ||| || || || ||||||||| Sbjct 360263 GAGCAGGTCGAGGGTTTCCCCAAGCAAAACGAGGTCAAGACCGTCTACGTCGAGCACGAC 360204 Query 279558 ATCGACTC 279565 | ||||| Sbjct 360203 TTGGACTC 360196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829596470027