Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq23 329 6e-85 seq88 253 4e-62 >seq23 Length=86929 Score = 329 bits (364), Expect = 6e-85 Identities = 598/861 (69%), Gaps = 32/861 (4%) Strand=Plus/Minus Query 42301 TCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGG 42360 ||||| |||||||||||||| || || ||||||||| |||||||| ||||| Sbjct 35332 TCTGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCT 35273 Query 42361 CCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAA 42416 |||||||| || |||| | | |||| | || |||| || ||| || Sbjct 35272 CCAAGGACCTTCACGACTGGAACAAGC-GTCTCAACGATGACGAGCGCTTCTTCATCTCC 35214 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||| ||||| || ||||| ||||| |||||||| | | Sbjct 35213 CACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGA 35154 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 ||| | || || || | ||||| || ||||||||||| ||||| || || Sbjct 35153 TTCTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATG 35094 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593 |||||||| ||||| ||| ||| | ||||||| |||| ||||| || ||| Sbjct 35093 GAGAACGTTCACTCAGAGACCTACTCT---CTGCTCATCGACACATACATTAGCGAGCCC 35037 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 |||| | || ||||| ||||| || | || ||||||||| |||||||| Sbjct 35036 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 34977 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| || |||||| | | || | | || |||| | | | || || || Sbjct 34976 GACTGGGCCCTGCGATGGATCTCC-GACAAGAACTCCACATTCGCCAACCGCCTCGTTGC 34918 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 || |||| || ||||| ||||||||| || | ||||||||||||||||||||||| Sbjct 34917 ATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAA 34858 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || ||| | ||||||||| || || ||||| ||||| |||||| | ||||||| Sbjct 34857 GAAGCGCGGTCT-GATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGG 34799 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | |||| | ||||| |||||||| || ||||| | |||| | |||||||| Sbjct 34798 GCATGCACACCGACTTCGCCTGCCTTCTCTTCTC---TCTCCTCGAGAACAAGCCCAGCC 34742 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 ||| ||| | || |||||||| || ||||| ||||| ||| |||||||| | | Sbjct 34741 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 34682 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGTGCAAGTACATCCAG 43010 | | || || | ||| |||||||||| | | || ||||||||| | |||||| || Sbjct 34681 ACGCACTACCATGCGCTCTGCTCGGCATGAA-CGCTACTCTCATGTGCCAATACATCGAG 34623 Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCTACAACACG 43064 | |||||| |||| ||| |||| ||| ||| || || | ||||| || | Sbjct 34622 TTCGTCGCTGACCGTCTGCTGT------TGGCCCTCGGCAACGTCAAGGTCTACCACGCC 34569 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 | |||||||||||| ||||||||||| || ||| || ||||||||||| |||||| Sbjct 34568 ACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAG 34509 Query 43125 AAGCGCGTCGCCGACTACCAG 43145 |||||||||| |||||||||| Sbjct 34508 AAGCGCGTCGGCGACTACCAG 34488 >seq88 Length=290544 Score = 253 bits (280), Expect = 4e-62 Identities = 517/761 (68%), Gaps = 18/761 (2%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||| || || ||||| || | |||||||| |||||||| ||||| ||| Sbjct 179770 GCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGG 179829 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || |||||| || |||| || || ||| |||| |||||| ||||||||| Sbjct 179830 TTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTG 179889 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 |||||||| ||||| || |||||| ||| || | |||| | || ||| || | Sbjct 179890 TAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTT 179949 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC--CTCGTAGCGGGTGTACAGGGCCT 244925 || || ||| |||| ||||| ||||| |||||||| |||||| || | Sbjct 179950 TGTGCGCGAACAGTCTCGCGACCCTTGT--TCTGCTTCTCGTAGCTCTCGTACAGAGCTT 180007 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 |||| || || |||| ||| | ||||| |||||| ||||||||| || ||| Sbjct 180008 CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCC 180067 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | | |||| ||| | || | || |||||||||||| || ||||| || || | ||||| Sbjct 180068 AGTTGCCGTTGTCTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGA 180127 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | | | ||| ||| ||| |||||| | ||| || | ||| |||||| Sbjct 180128 GATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGA 180187 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| ||||||| ||||| | ||||| |||| ||| || || ||||||||||| |||| Sbjct 180188 CGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCT 180247 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | | | ||||| |||| | | || || | || | | || ||| Sbjct 180248 GGTCGA----CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTA 180303 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCC--CTGAGGTTGCTGATGGAC 245278 || ||||| ||||| |||||| | ||| | || | || || ||| | | Sbjct 180304 GATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGG-TGC--ACGTTG 180360 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | ||| | ||||| ||| ||||||||| | || ||| |||||| ||||| ||| Sbjct 180361 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 180420 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 || || ||||||||| |||||||| || || ||||| || |||| || || || Sbjct 180421 CCGTCGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGT 180480 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||| || |||||||| || || |||||| || ||||| Sbjct 180481 GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 180521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944332743080720