Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq23 129 1e-24 >seq23 Length=86929 Score = 129 bits (142), Expect = 1e-24 Identities = 294/438 (67%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 ||||| ||||| | || ||| |||| | ||||||| ||||| ||| ||| Sbjct 34907 GTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGT 34848 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 ||||||| || || | || |||||| ||||| ||| ||||||||| | ||| Sbjct 34847 CTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACACC 34788 Query 243439 CAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAA--CGGTCA 243496 | |||| ||| | | || ||| ||||||||| ||| | | | | |||| Sbjct 34787 GACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGC--CCAGCCCAGAGTCTGTCA 34730 Query 243497 AACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCAT 243556 | |||||||| ||||| || || | || |||| ||| | ||||||| | |||| Sbjct 34729 GAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCAT 34670 Query 243557 GCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACC 243616 || || | ||||||||| || |||||| | || |||||||| ||||| || |||| Sbjct 34669 GCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACC 34610 Query 243617 GCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTA 243676 | | | | || || || | | || || ||| || ||| |||||||| | ||| | Sbjct 34609 GTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAACCCCTTCGACTTCA 34550 Query 243677 TGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATC 243736 ||||| |||||| || || || || ||||||||||| ||||| ||| | || || | Sbjct 34549 TGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACC 34490 Query 243737 A-ACGCCCTGGTGTGATG 243753 | | | || ||||| ||| Sbjct 34489 AGAAGGCC-GGTGTCATG 34473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102872270534450