Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01]
547 sequences; 33,016,309 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq88 250 3e-61
seq23 87.8 2e-12
>seq88
Length=290544
Score = 250 bits (276), Expect = 3e-61
Identities = 1110/1738 (64%), Gaps = 31/1738 (2%)
Strand=Plus/Plus
Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656
||||| |||||||| || |||||||| || ||||||| || | ||||| || |
Sbjct 178888 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTG 178947
Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716
| |||| | || || | |||| || ||| | || || || || |||||
Sbjct 178948 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAA 179007
Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTTC 113774
||||| || || ||||| ||||| | |||||| | ||| ||||| || ||
Sbjct 179008 GCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTCT 179065
Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG--ATGGAGCCACCCGC 113832
|||| ||| |||| | || || ||||| | || || ||| || || || || |
Sbjct 179066 TGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGG-GA-ATCCTGGCAATCGAACCTCCATC 179123
Query 113833 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 113892
|| || | | |||||| | || ||||| ||||| || | || |||| |
Sbjct 179124 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAG 179183
Query 113893 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950
| ||| | ||||||| |||||||| |||||| || | |||||| |||
Sbjct 179184 CAACCATGGGT--TGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTG 179241
Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010
| ||||||||||| |||||||| ||||| |||| || || | |||||||| || |||
Sbjct 179242 GAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGC 179301
Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070
|||||||| ||||| || ||| || | ||| | || ||| ||||| || |
Sbjct 179302 ATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGAC 179361
Query 114071 TCCCAGTCGTAGTTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128
||||||| || | || | || | | | ||||||||| ||||||||||||| |
Sbjct 179362 GCCCAGTCCCAGAGGTCAG-TAGGTGTGACATT-CCACATATCGTACTGGAGGATACCCT 179419
Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGC 114188
|||| | || ||||| || | |||| ||| || || ||| || | ||| |
Sbjct 179420 GGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATG 179479
Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 114248
| ||| || || || || || ||||| || || | || | ||| || |
Sbjct 179480 AGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTT 179539
Query 114249 CGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 114308
|||| || || || | || ||| | || |||| || |||||||| ||||| |
Sbjct 179540 CGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCA 179599
Query 114309 GGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCC 114368
|| || || || || | | || || || || || || || ||
Sbjct 179600 TACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGA 179659
Query 114369 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 114428
||||| | | | || | || |||||| |||| ||||| ||| || ||||| | |
Sbjct 179660 CCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGA 179719
Query 114429 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 114488
| ||||| || | || | | |||| | ||| ||||| | || |||| || |
Sbjct 179720 AGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGC 179779
Query 114489 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 114548
| |||| | |||||| | | |||||||| | ||| || || |||| || || ||
Sbjct 179780 AAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGC 179839
Query 114549 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGT 114608
||||| || | |||||| || || ||| ||| || || |||||||| |||||
Sbjct 179840 GGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAA 179899
Query 114609 ATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCA 114668
| || | || ||||| || || | || || || || | ||| | | || | |
Sbjct 179900 AGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCGAA 179959
Query 114669 CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCAC 114728
|||| || | || || |||||| | ||| || ||||| || |||||||
Sbjct 179960 CAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCAC 180019
Query 114729 CCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCT 114788
| | | || | ||| || || || | ||||| | || | ||| | || |
Sbjct 180020 CGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGT 180079
Query 114789 CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGC 114848
| | ||||||||||||||||||||| || ||||| ||||| |||||||||| ||| ||
Sbjct 180080 CTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGC 180139
Query 114849 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 114908
| | || || | || || || |||| || | ||| | | || || |||||||
Sbjct 180140 GGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCC 180199
Query 114909 ACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACAT 114962
| || || ||||| | |||| | | ||| |||| ||| |||||| ||||
Sbjct 180200 ATGGCTCGAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACCCTGGTCGACAT 180256
Query 114963 ACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTG 115022
| | || ||| || |||| || ||||| ||||||| ||||| |||| || || |
Sbjct 180257 AGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAG 180316
Query 115023 T-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCC 115080
| || |||| || ||| | | | || | | || | || | |||||||| ||
Sbjct 180317 TGCCACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCC 180374
Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140
|| ||| ||||| ||| || | |||| || |||| || |||||||| |||
Sbjct 180375 AGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTC 180434
Query 115141 ACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 115200
|||| | |||| |||||||| |||||||||||| |||||| || ||||||||
Sbjct 180435 CTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAA 180494
Query 115201 GAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGA 115259
| || || | ||||| |||| ||| ||| ||||| | ||||||||||| | |
Sbjct 180495 CAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGATGG 180553
Query 115260 CGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317
| ||||| || |||||||| || | | || ||||| | ||||| ||| ||
Sbjct 180554 CCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 180611
>seq23
Length=86929
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124
||||||||||| |||||||| || || ||||| || || ||||| ||||| ||||||
Sbjct 34798 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 34857
Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184
|| | |||||| || | || ||||| ||||||||| ||||| ||| |||||
Sbjct 34858 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 34917
Query 126185 GCAAAGAGACG 126195
|||| ||| ||
Sbjct 34918 GCAACGAGGCG 34928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597349515594760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |