Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001696825.1_202016-08-01] 547 sequences; 33,016,309 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq88 250 3e-61 seq23 87.8 2e-12 >seq88 Length=290544 Score = 250 bits (276), Expect = 3e-61 Identities = 1110/1738 (64%), Gaps = 31/1738 (2%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||| |||||||| || |||||||| || ||||||| || | ||||| || | Sbjct 178888 CGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTG 178947 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | || || | |||| || ||| | || || || || ||||| Sbjct 178948 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAA 179007 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTTC 113774 ||||| || || ||||| ||||| | |||||| | ||| ||||| || || Sbjct 179008 GCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTCT 179065 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG--ATGGAGCCACCCGC 113832 |||| ||| |||| | || || ||||| | || || ||| || || || || | Sbjct 179066 TGTAAAGGGTCTTTGTCTCCTCAGGGATGTTGG-GA-ATCCTGGCAATCGAACCTCCATC 179123 Query 113833 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 113892 || || | | |||||| | || ||||| ||||| || | || |||| | Sbjct 179124 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAG 179183 Query 113893 GAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 | ||| | ||||||| |||||||| |||||| || | |||||| ||| Sbjct 179184 CAACCATGGGT--TGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTG 179241 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | ||||||||||| |||||||| ||||| |||| || || | |||||||| || ||| Sbjct 179242 GAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGC 179301 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 |||||||| ||||| || ||| || | ||| | || ||| ||||| || | Sbjct 179302 ATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGAC 179361 Query 114071 TCCCAGTCGTAGTTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||||||| || | || | || | | | ||||||||| ||||||||||||| | Sbjct 179362 GCCCAGTCCCAGAGGTCAG-TAGGTGTGACATT-CCACATATCGTACTGGAGGATACCCT 179419 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGC 114188 |||| | || ||||| || | |||| ||| || || ||| || | ||| | Sbjct 179420 GGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGACCAAGTTCCTTTGCGATGTCGCATG 179479 Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 114248 | ||| || || || || || ||||| || || | || | ||| || | Sbjct 179480 AGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTT 179539 Query 114249 CGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 114308 |||| || || || | || ||| | || |||| || |||||||| ||||| | Sbjct 179540 CGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCA 179599 Query 114309 GGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCC 114368 || || || || || | | || || || || || || || || Sbjct 179600 TACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGA 179659 Query 114369 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 114428 ||||| | | | || | || |||||| |||| ||||| ||| || ||||| | | Sbjct 179660 CCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGA 179719 Query 114429 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 114488 | ||||| || | || | | |||| | ||| ||||| | || |||| || | Sbjct 179720 AGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGC 179779 Query 114489 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCT 114548 | |||| | |||||| | | |||||||| | ||| || || |||| || || || Sbjct 179780 AAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGC 179839 Query 114549 TAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGT 114608 ||||| || | |||||| || || ||| ||| || || |||||||| ||||| Sbjct 179840 GGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAA 179899 Query 114609 ATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCA 114668 | || | || ||||| || || | || || || || | ||| | | || | | Sbjct 179900 AGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCGAA 179959 Query 114669 CAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCAC 114728 |||| || | || || |||||| | ||| || ||||| || ||||||| Sbjct 179960 CAGTCTCGCGACCCTTGTTCTGCTTCTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCAC 180019 Query 114729 CCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCT 114788 | | | || | ||| || || || | ||||| | || | ||| | || | Sbjct 180020 CGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGT 180079 Query 114789 CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGC 114848 | | ||||||||||||||||||||| || ||||| ||||| |||||||||| ||| || Sbjct 180080 CTTGAACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGC 180139 Query 114849 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 114908 | | || || | || || || |||| || | ||| | | || || ||||||| Sbjct 180140 GGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAAAGACGTCAGCGTGCC 180199 Query 114909 ACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACAT 114962 | || || ||||| | |||| | | ||| |||| ||| |||||| |||| Sbjct 180200 ATGGCTCGAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACCCTGGTCGACAT 180256 Query 114963 ACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTG 115022 | | || ||| || |||| || ||||| ||||||| ||||| |||| || || | Sbjct 180257 AGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCATTAGATGTTCCGTTAG 180316 Query 115023 T-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCC 115080 | || |||| || ||| | | | || | | || | || | |||||||| || Sbjct 180317 TGCCACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCC 180374 Query 115081 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTC 115140 || ||| ||||| ||| || | |||| || |||| || |||||||| ||| Sbjct 180375 AGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTC 180434 Query 115141 ACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 115200 |||| | |||| |||||||| |||||||||||| |||||| || |||||||| Sbjct 180435 CTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGCCCGCGTTGAA 180494 Query 115201 GAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGA 115259 | || || | ||||| |||| ||| ||| ||||| | ||||||||||| | | Sbjct 180495 CAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGATGG 180553 Query 115260 CGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 | ||||| || |||||||| || | | || ||||| | ||||| ||| || Sbjct 180554 CCTTCTCGATGTCATCGCCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 180611 >seq23 Length=86929 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||||||||| |||||||| || || ||||| || || ||||| ||||| |||||| Sbjct 34798 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 34857 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| || | || ||||| ||||||||| ||||| ||| ||||| Sbjct 34858 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 34917 Query 126185 GCAAAGAGACG 126195 |||| ||| || Sbjct 34918 GCAACGAGGCG 34928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349515594760